Query= MSMg01no147_h01.b1 MSMg01no147_h01.b1 CHROMAT_FILE:
MSMg01no147_h01.b1 PHD_FILE: MSMg01no147_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:02 2005
(623 letters)
>mm_chr2_34902292_34903315
Length = 1024
Score = 1000 bits (517), Expect = 0.0
Identities = 599/629 (95%), Gaps = 6/629 (0%)
Strand = Plus / Plus
Query: 1 cagtcagtaaaa-----gcttggatctgaccccggttaaaatggcaccagagtctgcttt 55
|||||| ||||| |||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 196 cagtcaataaaagctatgcttggatctgaccccagttaaaatggcaccagagtctgattt 255
Query: 56 gtaactactctatctcattatctgtcatcaaagg-aaaatatttataagaagttatcttg 114
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 256 ttaactactctctctcattatctgtcatcaaaggaaaaatatttataagaagttatctca 315
Query: 115 ttatttagagtaagtgaagacaccagattttcttatcagtcaagtcatgatggaaaaaca 174
|||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 316 ttatctagagtaaatgaagacaccagattttcttatcagtcaagtcatgatgggaaaaca 375
Query: 175 ggaggccattcccaaaggaagccttaacaaccaagaaaggccctggggttcgggattgag 234
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ggaggccattcccaaaagaagccttaacaaccaagaaaggccctggggttcgggattgag 435
Query: 235 actacacacttgctatacaagagtgatgacgctaagtggtgggtagtgtgaacggtacca 294
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 436 actacacacttgctatacaagagtgatgacgctaagtgatgggtagtgtggacggtacca 495
Query: 295 tttccaggatgcatcctctatgataggagggcaaggtgagcggttatacttaattttatg 354
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 496 tttccaggatgcatcctctatgataggagtgcaaggtgagaggttatacttaattttatg 555
Query: 355 tggagttaggctgaaaggctgaaaaagatgacggtttttcctttatttaaacaaatcatc 414
|||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 556 tggagttaggctgaaaggatgaaaaagatgatggtttttcctttatttaaaaaaatcatc 615
Query: 415 ataattttttccatccttaaaaaagaagtgtgtcataaaaccagagacactgaaacctat 474
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ataatttttttcatccttaaaaaagaagtgtgtcataaaaccagagacactgaaacctat 675
Query: 475 agaggagaaagtggggaaaagcctcgaagatgtgggcacaggggaaaaattcctgaacag 534
||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 676 agaagagaaagtggggaaaagcctagaagatatgggcacaggggaaaaattcctgaacag 735
Query: 535 aacagcaatggcttgtgctgcaagatcaagaatcgacaaatgggacctcataaaattgca 594
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 736 aacagcaatggcttgtgctgcaagatcaagaatcaacaaatgggacctcataaaattgca 795
Query: 595 aagcttctgtaaggcaaaagatactgtca 623
||||| |||||||||||||||||||||||
Sbjct: 796 aagctcctgtaaggcaaaagatactgtca 824
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1024
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1014
Effective search space: 621582
Effective search space used: 621582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_h01.g1 MSMg01no147_h01.g1 CHROMAT_FILE:
MSMg01no147_h01.g1 PHD_FILE: MSMg01no147_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:02 2005
(657 letters)
>mm_chr2_35059530_35060586
Length = 1057
Score = 1189 bits (615), Expect = 0.0
Identities = 645/657 (98%), Gaps = 4/657 (0%)
Strand = Plus / Minus
Query: 1 atagagttgtcttagaatgggaccagagagatggctcaaaggttaagagcatgtattctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 atagagttgtcttagaatgggaccagagagatggctcaaaggttaagagcatgtattctt 786
Query: 61 gcagaagacctattccattcccagaatgcacatagtggcttgtaaccatctataactcca 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 785 gcagaagacctattccattcccagaatgtacatagtggcttgtaaccatctataactcca 726
Query: 121 accattccagggagtctggtgcctcttacttctgtggacaccaggcatgcgcacggtgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 accattccagggagtctggtgcctcttacttctgtggacaccaggcatgcgcacggtgca 666
Query: 181 taggcacacaggcaaatcattcatacacttacaattaaaaattaaaaaggcttatagaaa 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 taggcatacaggcaaatcattcatacacttacaattaaaaattaaaaaggcttatagaaa 606
Query: 241 ctaggtaagaaaatgacttttggatagttcttggtgtgtaataattgttcagtaacacca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ctaggtaagaaaatgacttttggatagttcttggtgtgtaataattgttcagtaacacca 546
Query: 301 aaaggtttcacttcaggtaacaaacagacagaaactttctggttaggtacaaatccatcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 545 gaaggtttcacttcaggtaacaaacagacagaaactttctggttaggtacaaattcatcc 486
Query: 361 ctgagcaaacagtgacaactgatgctcagttttctcctttagttaccaaggcagtatcaa 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 485 ctgagcaaacagtgacaactgatgctcagttttctcctttagttaccaagacagtatcaa 426
Query: 421 agcaaaaaaaaaaaatttttttatcctttgctatgtttaagaaggaattcacatcctggt 480
||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 425 agcaaaaaaaaaa----tttttattctttgccatgtttaagaaggaattcacatcctggt 370
Query: 481 acatacaagtgttctacaactgcctagaaatttccttgatttaaaaaatgtcaaaatatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 acatacaagtgttctacaactgcctagaaatttccttgatttaaaaaatgtcaaaatatg 310
Query: 541 tacataagtataaaaaaatgtataaatgtcttagtcattgcctgttgctgtgaagagacc 600
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 309 tacataagtataaaaaaatgtataaatgtcttagtcattgccagttgctgtgaagagacc 250
Query: 601 tcaggaccaaggcaacttgtagaaaaggaagcatttaattgaggtttccttacagtt 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tcaggaccaaggcaacttgtagaaaaggaagcatttaattgaggtttccttacagtt 193
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
