Query= MSMg01no147_h22.b1 MSMg01no147_h22.b1 CHROMAT_FILE:
MSMg01no147_h22.b1 PHD_FILE: MSMg01no147_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:06 2005
(661 letters)
>mm_chr2_121319018_121320078
Length = 1061
Score = 1220 bits (631), Expect = 0.0
Identities = 643/647 (99%)
Strand = Plus / Minus
Query: 5 gaattcactcatccaaagcggacatggtggcagacacctttaatccctgcaccaggaggc 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gaattcactcatccaaagtggacatggtggcagacacctttaatccctgcaccaggaggc 588
Query: 65 agagacaggcagatctgagtttaaggccatccctgtctacagagtaagatctgggatcac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 agagacaggcagatctgagtttaaggccatccctgtctacagagtaagatctgggatcac 528
Query: 125 cagaactacacagagacaccttgtctcaaaaaataaagagttcagtcatcaatctacata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 cagaactacacagagacaccttgtctcaaaaaataaagagttcagtcatcaatctacata 468
Query: 185 gttcaggaccttcctagactctataagacagcctaagaagcaaaacaaaaaaaatgtaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gttcaggaccttcctagactctataagacagcctaagaagcaaaacaaaaaaaatgtaaa 408
Query: 245 atatagcagggaaataggcaaatttttttcctccctactagaattggaacccagggccta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 atatagcagggaaataggcaaatttttttcctccctactagaattggaacccagggccta 348
Query: 305 gaaaatacatgccaagtgttctactgttgaattatatccctagttcttttattttcgtgt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gaaaatacatgccaagtgttctactgttgaattatatccctagttcttttattttcgtgt 288
Query: 365 gtgtgtgtgtgcgcgcgtgtgttttttaaagtctcactaatctacttacgcagttcttga 424
||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gtgtgtgtgtgtgtgtgtgtgttttttaaagtctcactaatctacttacgcagttcttga 228
Query: 425 agttgagaaaccctgcctacaagtcttagcaacctgagtttgatcctatagatgaacata 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 agttgagaaaccctgcctacaagtcttagcaacctgagtttgatcctatagatgaacata 168
Query: 485 gcagtagataactcagtctggcaaccagcaaattgacatctgacttccatatgtattcta 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 gcagtagataactcagtctggcaaccagcaaattgacatctgacttccatatgtattcta 108
Query: 545 tggaatgtatgaattagtgttcacatgagatgtatttaaaaagcaaagtgtaaaaaaaaa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 tggaatgtatgaattagtgttcacatgagatgtatttaaaaagcaaagtgtaaaaaaaaa 48
Query: 605 aaagaaaaagccacaagtgtggttgagcacacctttaatccctgcac 651
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 aaagaaaaagccacaagtgtggttgagcacacctttaatccctgcac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_h22.g1 MSMg01no147_h22.g1 CHROMAT_FILE:
MSMg01no147_h22.g1 PHD_FILE: MSMg01no147_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:06 2005
(561 letters)
>mm_chr2_121179184_121180143
Length = 960
Score = 1046 bits (541), Expect = 0.0
Identities = 556/561 (99%), Gaps = 1/561 (0%)
Strand = Plus / Plus
Query: 1 tattacaactctgtaatgggaaataaccggatggagaagtctgttctcaaacatagactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattacaactctgtaatgggaaataaccggatggagaagtctgttctcaaacatagactg 260
Query: 61 aaggaagacgaaggtccaaattccaagttaacaaagcaaaaatagaagcctgacaggaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggaagacgaaggtccaaattccaagttaacaaagcaaaaatagaagcctgacaggaat 320
Query: 121 agctatgacagggccagggcttacgtggatgcacttctgggacaagctagggttttaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctatgacagggccagggcttacgtggatgcacttctgggacaagctagggttttaatg 380
Query: 181 tgatgttcccaaaaccacttttctgctttctgtgttctttcccctttatcgtctcctcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatgttcccaaaaccacttttctgctttctgtgttctttcccctttatcgtctcctcaa 440
Query: 241 actttgttgcataataattctacactgggctaaagagcagtcttactgtggaaggaaaag 300
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 actttgttgcataagaattctacactgggctaaagggcagtcttactgtggaaggaaaag 500
Query: 301 agggaagggcttggggggggggcaaggaggcaatgtagggaacatgcacactacatcaga 360
||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||
Sbjct: 501 agggaagggcttggggggggg-caaggaggcaatgtagggaacatggatactacatcaga 559
Query: 361 cctaaagaagggtatccagcaaggttgaactgtgactgctttagctcttaggattgagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cctaaagaagggtatccagcaaggttgaactgtgactgctttagctcttaggattgagaa 619
Query: 421 cactcacatagttctctacttttctggaatcaccttgcatttgagagaggctccaacaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cactcacatagttctctacttttctggaatcaccttgcatttgagagaggctccaacaat 679
Query: 481 ggtaaataaaactatttacttctcacagcactaccaatattagactttcccaccttcaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ggtaaataaaactatttacttctcacagcactaccaatattagactttcccaccttcaaa 739
Query: 541 agtgaacccccaagcctgtgc 561
|||||||||||||||||||||
Sbjct: 740 agtgaacccccaagcctgtgc 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 960
Length adjustment: 10
Effective length of query: 551
Effective length of database: 950
Effective search space: 523450
Effective search space used: 523450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
