BAC Information

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BAC

Clone NameMSMg01-147P15
Chromosome2 (Build37)
Map Location 88,172,728 - 88,173,154
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175
Downstream geneOlfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147P15.T7 (MSMg01no147_p15.b1)MSMg01-147P15.TJ (MSMg01no147_p15.g1)
ACCAG351109AG351110
length731765
length of high quality
(start - end)		449 (41 - 489)404 (77 - 480)
definitionCHROMAT_FILE: MSMg01no147_p15.b1 PHD_FILE: MSMg01no147_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:43 2005CHROMAT_FILE: MSMg01no147_p15.g1 PHD_FILE: MSMg01no147_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATTTCTTCCCCCTTATGCTTTTACTAATGAAGACAGGATGCTACTAATAA
CTAGATGGACTCTTGTAGACAAGTTTATTTTCATAATGGCAGATTATTAG
TGACTTGAATCTCCCCATATGACTTGATGTTTTAAAAGTGATTATTGGCT
AAATTAGGATGAGGACTTTGTTTAATTATCTTGTTTTCAGCTCACATGTA
CACTCCAAAGACCCAGGGGTTTCATTCCTTTCTGATCATGCAGTTATTTG
TAAAATAAAAAAACATGTCAGTTAAATTTGTCCTCTGAGTCTGCTTCCCC
TTCAGAAACACTATGTATCCTGAGGTTTCTATTCATAATGGGAGGAAATC
AAGTTTCTCACCTTCCTTAGAGGCTAATAGTTTGCAAGAAATGGAGAAGT
TAAAAAGAGTCAAAATTATATATATGATCTGTGTGTGTGCGTGTGTGTGT
GTGCGTGTATATTTACATATAACCTGTATAAATCTCACCATTCCTATCTT
TCTTCCATACGCCTCCTATCCTCCTTACCACCCTCCCATTACTTTCATTT
TCTCTTCATATTTCTTTTTTCCCCCCGACCCCACCACCTTCATACTCTTC
CTTCTCTCCCATTATATCCCTCCTCCTCCCCTACTTCCCCTTCCTACCTT
CCTTATTTACCCCGTGTTTCGCCCCCCCTTG

CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGAGCCGCAGGGCAGTGGTGGCA
CATGCCTTTAATCCCAGCATTTGGGAGGCAGAGGCAGGTGGAATTCTGAG
TTCGAGGCCAGCCTGGTCTGCAGAGTGAGTTCCAGGACAGCCAGGGCTAT
ACAGAGAAACCCTGTCTCATAAAAAAAAAAAAAAAAAAAAAATCCGGTAA
GTGGCCATAATAGCTGCTTAAGTGGCCATAATGGCCGCTTCCCCAGTTGA
GTCTGGGGTAGTAGAGATGAAATATAAATTTTTTTAAGGATGTTAACTCC
AGGACACTGGAGTGAGTGTTTGCTAGCAGTAGGAAGAATTGCAAGTGTCT
ATCCTTTGAGCTAGCAAAAGCATATCAAAATGTACTGGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCTCCTAATACTCCTAT
TTTTATACTTTAACGTCATGATTATACTACCTCTCTATTCCCCCTTTTGC
TCCTTCTTCTTTCGAGTTTCCTCGCATCCCCCTATCCCCTTATATTTTCT
CTAACTTTTCCCAATCTTATGATACTCCACCTCCTGTTCCCTAGCTCCCT
CTTTTTCCCCCCTTTCTTCTATCGTTTTGCTAAGGTTATAAAGTATTCAT
TCGCCCCTCTTTTTTTCCTCTTTCCTCCTCTTTCCCCCCCTTTTTTTGCG
CGCTCTTTTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_p15.b1 MSMg01no147_p15.b1 CHROMAT_FILE:
MSMg01no147_p15.b1 PHD_FILE: MSMg01no147_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:43 2005
         (449 letters)



>mm_chr2_88172508_88173354
          Length = 847

 Score =  783 bits (405), Expect = 0.0
 Identities = 423/429 (98%), Gaps = 2/429 (0%)
 Strand = Plus / Plus

                                                                       
Query: 21  ccttatgcttttactaatgaagacaggatgctactaataactagatggactcttgtagac 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ccttatgcttttactaatgaagacaggatgctactaataactagatggactcttgtagac 280

                                                                       
Query: 81  aagtttattttcataatggcagattattagtgacttgaatctccccatatgacttgatgt 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aagtttattttcataatggcagattattagtgacttgaatctccccatatgacttgatgt 340

                                                                       
Query: 141 tttaaaagtgattattggctaaattaggatgaggactttgtttaattatcttgttttcag 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tttaaaagtgattattggctaaattaggatgaggactttgtttaattatcttgttttcag 400

                                                                       
Query: 201 ctcacatgtacactccaaagacccaggggtttcattcctttctgatcatgcagttatttg 260
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ctcacatgtacactccaa-gacccaggggtttcattcctttctgatcatgcagttatttg 459

                                                                       
Query: 261 taaaataaaaaaacatgtcagttaaatttgtcctctgagtctgcttccccttcagaaaca 320
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 taaaataaaaaaacatggcagttaaatttgtcctctgagtctgcttccccttcagaaaca 519

                                                                       
Query: 321 ctatgtatcctgaggtttctattcataatgggaggaaatcaagtttctcaccttccttag 380
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||
Sbjct: 520 ctatgtatcctgaggtttctattcataatgggaggaaatcaagtttcttagcttcattag 579

                                                                       
Query: 381 aggctaatagtttgcaagaaatggagaagttaaaaagagtcaaaattatatatatgatct 440
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 580 aggctaatagtttgcaagaaatggagaagttaaaaagagtcaaaattatatatatgat-t 638

                    
Query: 441 gtgtgtgtg 449
           |||||||||
Sbjct: 639 gtgtgtgtg 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 847
Length adjustment: 10
Effective length of query: 439
Effective length of database: 837
Effective search space:   367443
Effective search space used:   367443
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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