BAC Information

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BAC

Clone NameMSMg01-148B23
Chromosome2 (Build37)
Map Location 115,251,975 - 115,252,583
singlet/doubletsinglet
Overlap genenone
Upstream geneAtpbd4, LOC100043219, LOC100043222
Downstream geneLOC100043232, LOC100043236, BC052040, Mrg1, G630016G05Rik, 2810405F15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148B23.T7 (MSMg01no148_b23.b1)MSMg01-148B23.TJ (MSMg01no148_b23.g1)
ACCAG351214AG351215
length740734
length of high quality
(start - end)
689 (45 - 733)609 (71 - 679)
definitionCHROMAT_FILE: MSMg01no148_b23.b1 PHD_FILE: MSMg01no148_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:55 2005CHROMAT_FILE: MSMg01no148_b23.g1 PHD_FILE: MSMg01no148_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAATCCGCGGAATT
CTCACCTGAGGTTCCCGAATGGCAGAGAAGCACCTGAAAAAATGCTCAAC
ATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACC
TCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGC
TGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTG
CAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAAC
TGGATATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATAT
CCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCAT
AGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCT
CAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTAC
TACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGAT
GGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAACT
CACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTAAGAT
ACCCAAGATATAAGATACAATTTCCTAAACACATGAAACTCAAGAAAAAT
GAAGACTGAAGTGTGAACACTATGCCCCTCCTTAGAAGTG
ATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAATAGATAGTAGGAATTATCTAGGAGCTATTC
TACTGCTCACTTTTATGTGACTATTTACTGGCTTGTTTGAAACTGGATTT
AAGGAAGCTTAGCTTAAGTGCTGTCTGATTTTCATAGCCTCTGAAAATGG
AACTCTTGTTTAAAGAGTGAAATCTCTTTATAAAATTTTATTTCTCCATT
TAAAATCTCTCTGTATAAACCATCCAGGAAATCCTTGTCCACCTATGGGG
AAGTCCTTTTTCTGCCTATCTTTGCCTTATTTGGTTTACCATAATTCCTC
ATCATTGCCAGAAACCGATCTTTGTTGTATCTGCTTCATTTATATATTTA
CTTGTTTAGTAAATGCTATTCTCTGAACAAAACTAGAAAACACAGTTGCT
AGACTGTCGATTTCTCTCTCTTGCATTATGATTCCTGGAGGGAGACTACA
TTTTATGTTTTCCCAGTTCTGTGCCATTTGTGTTTGCTTTGTTTTTGTTT
ATTTCTGTTGTTGTTGTTTTCTTCTAAAGCATTGATGCCTTTGTTAAGGT
TTCTATTGCTCTGATGAAACACCATGGCCAAAAAAGCAAGTTGGGAAGGA
AAGGGTTTATTTGGCTTATACTTTCGTCCAGATCATAGTTCTTTATTGAC
AGAAGTCAGGCTAGGAAGTCAAATACGGCAGGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_b23.g1 MSMg01no148_b23.g1 CHROMAT_FILE:
MSMg01no148_b23.g1 PHD_FILE: MSMg01no148_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:55 2005
         (609 letters)



>mm_chr2_115251869_115252877
          Length = 1009

 Score = 1154 bits (597), Expect = 0.0
 Identities = 606/609 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagatagtaggaattatctaggagctattctactgctcacttttatgtgactatttactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tagatagtaggaattatctaggagctattctactgctcacttttatgtgactatttactg 656

                                                                       
Query: 61  gcttgtttgaaactggatttaaggaagcttagcttaagtgctgtctgattttcatagcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gcttgtttgaaactggatttaaggaagcttagcttaagtgctgtctgattttcatagcct 596

                                                                       
Query: 121 ctgaaaatggaactcttgtttaaagagtgaaatctctttataaaattttatttctccatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ctgaaaatggaactcttgtttaaagagtgaaatctctttataaaattttatttctccatt 536

                                                                       
Query: 181 taaaatctctctgtataaaccatccaggaaatccttgtccacctatggggaagtcctttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 taaaatctctctgtataaaccatccaggaaatccttgtccacctatggggaagtcctttt 476

                                                                       
Query: 241 tctgcctatctttgccttatttggtttaccataattcctcatcattgccagaaaccgatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tctgcctatctttgccttatttggtttaccataattcctcatcattgccagaaaccgatc 416

                                                                       
Query: 301 tttgttgtatctgcttcatttatatatttacttgtttagtaaatgctattctctgaacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 415 tttgttgtatctgcttcatttatatatttacttgtttagtaaatgttattctctgaacaa 356

                                                                       
Query: 361 aactagaaaacacagttgctagactgtcgatttctctctcttgcattatgattcctggag 420
           ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 355 aactagaaaacacagttgctagactttcgatttctctctcttgccttatgattcctggag 296

                                                                       
Query: 421 ggagactacattttatgttttcccagttctgtgccatttgtgtttgctttgtttttgttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ggagactacattttatgttttcccagttctgtgccatttgtgtttgctttgtttttgttt 236

                                                                       
Query: 481 atttctgttgttgttgttttcttctaaagcattgatgcctttgttaaggtttctattgct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 atttctgttgttgttgttttcttctaaagcattgatgcctttgttaaggtttctattgct 176

                                                                       
Query: 541 ctgatgaaacaccatggccaaaaaagcaagttgggaaggaaagggtttatttggcttata 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 ctgatgaaacaccatggccaaaaaagcaagttgggaaggaaagggtttatttggcttata 116

                    
Query: 601 ctttcgtcc 609
           |||||||||
Sbjct: 115 ctttcgtcc 107


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)