BAC Information

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BAC

Clone NameMSMg01-148L12
Chromosome2 (Build37)
Map Location 150,843,513 - 150,843,830
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC279056, Zfp120, EG245174, 3300002I08Rik, LOC100043832, OTTMUSG00000015730, LOC668924, OTTMUSG00000015743, LOC545472, Cst7, 2310001A20Rik, Acss1, Vsx1, Entpd6, LOC100043605, Pygb, Abhd12, Gins1, LOC668925, 4930519N13Rik, LOC668926
Downstream geneNanp, LOC433486, LOC381390, 4930442J19Rik, LOC100043839, LOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2, Snph, LOC668929, BC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4, 5430432M24Rik, 2310046K01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148L12.T7 (MSMg01no148_l12.b1)MSMg01-148L12.TJ (MSMg01no148_l12.g1)
ACCAG351633AG351634
length722713
length of high quality
(start - end)
326 (45 - 370)318 (94 - 411)
definitionCHROMAT_FILE: MSMg01no148_l12.b1 PHD_FILE: MSMg01no148_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:42 2005CHROMAT_FILE: MSMg01no148_l12.g1 PHD_FILE: MSMg01no148_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGAATCCGCGGAA
TTCAGAACTTTTTTCCTGGAGAACGGCGGTAACCCGTAAGTATAGCTTTA
CAAGGTAAGTCTGGCCTTGAACTTTCTAACGAGATTCAAGACAGTCTATC
AGAAGTAAAGTGGAAAATAGCTTTACAAGGTAGGTCTGGCCTTGAACTTT
CTAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGAAAATAGCTTTA
CAAGGTATGTTTGGCCTTGAACTTTCTCTAGTGTTAGAAGCCCTTTTGTT
CCTTTTCACATGTTATCAAGTGGTTAAGGTAGGGCGGATTCTGGATGAAA
TTCAGGACAATCTATCAGAAGTAAAGCGGTGAGAGAGAATAGGAGCAAAG
AGAAAATATGGTACACACCCACACCCACCCAGGCCTTTCCACGGGTCTTG
AACCCGAGGAAAAGTTTAGGTCAGGTAAGAATACCTGGGGAGAGATTACA
AGGAAGGAGAAGGAACAAGAATCGACCATTGATCTCCTACAGGAGCTAGC
TCTTAGTAGTTCTGAATTACATGAAAAGGTTATTAGGCACCTGTCAGGCG
CTCTCCCGAGTAGGCGAAACCTCTGTCCCATATTGCACCCAGGCAGCCCC
TCTGTACTCACCAATTCTTATTGCCCTCCTCTAAAGTTGTACAACTGTAT
TGTACCGCCCCATTTTTCTTCN
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTACTTTTAAAGGCAAGTAGGAGAATCTGA
ACCTGGCTGGTAGAGCCAATGAGTCAAAAAGTGAAGCTAGGGAAGGGAAA
GTTAGGCTCATAATGCCAGGGATATACTCAGCAGGAAAACTATTCCAGGA
GTGACCAGATGTGATATTTTAGCTGGGAAAGTAGCTGGAAAGGTAACAAT
AGCTGGCTAATAAGACCACACGTGGGAGACTAGAGAATTCTCTCAGTGGT
TTAGAATTCATACTCTTCTCACAAAGGACCCAAGTTCAGTTCCCAGTTCT
CTTATTGGGCTAATCATGGTCACCTGCAACTCAGCTCTAAGGGAAACAGT
GCCTGTTCTTCTCTTCCCCCCCCCCAAACGTTTCCCCGTCACTTTTAATG
AGTGTTCACTTAAGATAGTGGAAGCCAGAGTCACTAGCCTTCATCCAACC
TCCTCGTGGACATCATGGCACTGTGAGCCCTCTCCTTCAGAAAAATTCTG
CATTGATGATTCCGGAGGGTGACTGTCGTGGTAATACAGCAAGCTTCCTT
TCCACTGACTTGTCTATCTATCAGGTTGTGCTCAAATCTGCCCCCATTAA
AAATTGCTACATTCTTTCCTCCCTTACTCCTTTACTTCTTCCTTCCCAAT
TAACCCTCCACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_l12.g1 MSMg01no148_l12.g1 CHROMAT_FILE:
MSMg01no148_l12.g1 PHD_FILE: MSMg01no148_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:43 2005
         (318 letters)



>mm_chr2_150843313_150844030
          Length = 718

 Score =  615 bits (318), Expect = e-180
 Identities = 318/318 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatctgaacctggctggtagagccaatgagtcaaaaagtgaagctagggaagggaaagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatctgaacctggctggtagagccaatgagtcaaaaagtgaagctagggaagggaaagtt 260

                                                                       
Query: 61  aggctcataatgccagggatatactcagcaggaaaactattccaggagtgaccagatgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggctcataatgccagggatatactcagcaggaaaactattccaggagtgaccagatgtg 320

                                                                       
Query: 121 atattttagctgggaaagtagctggaaaggtaacaatagctggctaataagaccacacgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atattttagctgggaaagtagctggaaaggtaacaatagctggctaataagaccacacgt 380

                                                                       
Query: 181 gggagactagagaattctctcagtggtttagaattcatactcttctcacaaaggacccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggagactagagaattctctcagtggtttagaattcatactcttctcacaaaggacccaa 440

                                                                       
Query: 241 gttcagttcccagttctcttattgggctaatcatggtcacctgcaactcagctctaaggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttcagttcccagttctcttattgggctaatcatggtcacctgcaactcagctctaaggg 500

                             
Query: 301 aaacagtgcctgttcttc 318
           ||||||||||||||||||
Sbjct: 501 aaacagtgcctgttcttc 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)