BAC Information

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BAC

Clone NameMSMg01-148M23
Chromosome2 (Build37)
Map Location 87,626,217 - 87,812,155
singlet/doubletdoublet
Overlap geneOlfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157
Upstream geneOlfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152
Downstream geneOlfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148M23.T7 (MSMg01no148_m23.b1)MSMg01-148M23.TJ (MSMg01no148_m23.g1)
ACCAG351701AG351702
length712711
length of high quality
(start - end)		662 (46 - 707)641 (71 - 711)
definitionCHROMAT_FILE: MSMg01no148_m23.b1 PHD_FILE: MSMg01no148_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:49 2005CHROMAT_FILE: MSMg01no148_m23.g1 PHD_FILE: MSMg01no148_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,811,498 - 87,812,155)(87,626,217 - 87,626,857)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTGTAATCACGAGACATCAATATGTTATTTCAACTCTCAACAAT
AAAATTAATAATCCAGAAACTTAAAAATGTAGTAGTAAGAAAAATGTAAA
CAAATAATAATCCAACCATAACAGAACAAAATAAATAGTGAAAATAGAAA
ACATCTCTTAATATTCTTATACTTAATTATTCTTAATGTTGTTGAAATAC
AAACATTAAATATTTTCTCTCATATGTAAGTCTTGGATTCAAATAAACAA
ACTTCAACTCATGTTTTTTAAAATTGCAAATAGATCCTTCTCCTGTATAA
TACATTCTGAATAAAGTTTCTACTACTTCTATGGCTCCCAATTTCCCTCC
ATATCTTGGTATATACCCAACCAACTCTATCCTACAACAGACATATTCAT
GTTTATTGCATAATCATGTTTATTGACACTACTCTCAAAAGCAAGGATAA
GAATGAGAATAAAGACCAACTGACAGATGAGTACATATATGTTATATATT
TTAGAAAATAAAATTTTATTCAATGTAAAGAATATAATTATATTCTTTGT
AAGAAGGTGAATAACTGGGTATATATGCCAAAGATGTTCTAATTGGTAAG
AAGGACACATGTTCCACTATGTTCATAGCAGCCTTATTTATCAGAGTCAA
AAGCTGGATATA

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTTTTGCAGGATTTGCCAATAACCCTGAG
ATGAAAGGGATAATTTGTCATGTTTCTAGTTATCTATCTGATTAATCTTC
TGCAGACGGTTGGCATGATCATTTTAATGAGAATGGATCCCCAGCTCCAC
ACATCCAAGTACTTTTACTTGAGCCATCTCTCTTTCTCTGATTTCTACTA
TTTCATTGCAATTGTTCTCAAAGTGTCAGTAGGTATATTTGGCTAGAACA
AATAAATTTGCTTAAGGGGCTGTGCTCTGTAGTTCTTCACTTCCTGCACC
TTTGCAGATTGAGTATATAGTACTGGCAGCGATGTCCTTGTTAGATACCA
GGCCATCAGCCACTCTTGCTCTACAAACCACACATGCCCAACAGTGTGGG
TACCTCACTGCTGATATTTACCTGGTGAGAACATTAGATGCTTTGAAACA
TTTTCCCTTGGCTTTCCACTTATGTATCTCTGAGTCCAATGAGATCAACC
ATTTCTTCTGTAATTTATGTGTACTTTACCTTCTCTCCTGCTCAGATACA
CAGTATTCAATATTTATGATTTATTTGTGCTGAGCACCCTTGCAAGTGTC
CTTATCTGTTACTGTTAAACCATCTATTCTGTCCTGGAAATGCACTCTTC
TGAGTGGAGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_m23.b1 MSMg01no148_m23.b1 CHROMAT_FILE:
MSMg01no148_m23.b1 PHD_FILE: MSMg01no148_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:49 2005
         (662 letters)



>mm_chr2_87811460_87812521
          Length = 1062

 Score = 1172 bits (606), Expect = 0.0
 Identities = 645/658 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactgtaatcacgagacatcaatatgttatttcaactctcaacaataaaattaat 64
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 696 gaattcactgtaagcatgagacatcaatatgttatttcaactctcaacaataaaactaat 637

                                                                       
Query: 65  aatccagaaacttaaaaatgtagtagtaagaaaaatgtaaacaaataataatccaaccat 124
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 636 aatccagaaacttgaaaatgtagtagtaagaaaaatgtaaacaaataataatccaatcat 577

                                                                       
Query: 125 aacagaacaaaataaatagtgaaaatagaaaacatctcttaatattcttatacttaatta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 aacagaacaaaataaatagtgaaaatagaaaacatctcttaatattcttatacttaatta 517

                                                                       
Query: 185 ttcttaatgttgttgaaatacaaacattaaatattttctctcatatgtaagtcttggatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ttcttaatgttgttgaaatacaaacattaaatattttctctcatatgtaagtcttggatt 457

                                                                       
Query: 245 caaataaacaaacttcaactcatgttttttaaaattgcaaatagatccttctcctgtata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 456 caaataaacaaacttcaactcatgttttttaaaattgcaaatagatccttctcctatata 397

                                                                       
Query: 305 atacattctgaataaagtttctactacttctatggctcccaatttccctccatatcttgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 atacattctgaataaagtttctactacttctatggctcccaatttccctccatatcttgg 337

                                                                       
Query: 365 tatatacccaaccaactctatcctacaacagacatattcatgtttattgcataatcatgt 424
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 336 tatatacccaaccaactctatcctacaacagccatattcatgtttattgcatattcatgt 277

                                                                       
Query: 425 ttattgacactactctcaaaagcaaggataagaatgagaataaagaccaactgacagatg 484
           |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 276 ttattgacactactctcaaaagcaaggataagaatgagcataaagtccaactgacagatg 217

                                                                       
Query: 485 agtacatatatgttatatattttagaaaataaaattttattcaatgtaaagaatataatt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 agtacatatatgttatatattttagaaaataaaattttattcaatgtaaagaatataatt 157

                                                                       
Query: 545 atattctttgtaagaaggtgaataactgggtatatatgccaaagatgttctaattggtaa 604
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 156 atattctttgtaagaaggtgaataactgggcatatatgccaaagatgttctaattggtaa 97

                                                                     
Query: 605 gaaggacacatgttccactatgttcatagcagccttatttatcagagtcaaaagctgg 662
           |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 96  gaaggacacatgttccactatgttcatagcagccttatttataagagtcaaaggctgg 39


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no148_m23.g1 MSMg01no148_m23.g1 CHROMAT_FILE:
MSMg01no148_m23.g1 PHD_FILE: MSMg01no148_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:50 2005
         (641 letters)



>mm_chr2_87626017_87627057
          Length = 1041

 Score = 1162 bits (601), Expect = 0.0
 Identities = 631/641 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttttgcaggatttgccaataaccctgagatgaaagggataatttgtcatgtttctagt 60
           |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 atttttgcaggagttgccaataaccctgagatgaaagggatactttgtcatgtttctagt 260

                                                                       
Query: 61  tatctatctgattaatcttctgcagacggttggcatgatcattttaatgagaatggatcc 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catctatctgattaatcttctgcagacggttggcatgatcattttaatgagaatggatcc 320

                                                                       
Query: 121 ccagctccacacatccaagtacttttacttgagccatctctctttctctgatttctacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagctccacacatccaagtacttttacttgagccatctctctttctctgatttctacta 380

                                                                       
Query: 181 tttcattgcaattgttctcaaagtgtcagtaggtatatttggctagaacaaataaatttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcattgcaattgttctcaaagtgtcagtaggtatatttggctagaacaaataaatttg 440

                                                                       
Query: 241 cttaaggggctgtgctctgtagttcttcacttcctgcacctttgcagattgagtatatag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttaaggggctgtgctctgtagttcttcacttcctgcacctttgcagattgagtatatag 500

                                                                       
Query: 301 tactggcagcgatgtccttgttagataccaggccatcagccactcttgctctacaaacca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 tactggcagcgatgtccttgttagataccaggccatcagccactcttgctctacatacca 560

                                                                       
Query: 361 cacatgcccaacagtgtgggtacctcactgctgatatttacctggtgagaacattagatg 420
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacaggcccaacagtgtgggtacctcactgctgatatttacctggtgagaacattagatg 620

                                                                       
Query: 421 ctttgaaacattttcccttggctttccacttatgtatctctgagtccaatgagatcaacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttgaaacattttcccttggctttccacttatgtatctctgagtccaatgagatcaacc 680

                                                                       
Query: 481 atttcttctgtaatttatgtgtactttaccttctctcctgctcagatacacagtattcaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atttcttctgtaatttatgtgtactttaccttctctcctgctcagatacacagtattcaa 740

                                                                       
Query: 541 tatttatgatttatttgtgctgagcacccttgcaagtgtccttatctgttactgttaaac 600
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 741 tatttatgatttatttgtgctgagcacccttgcaagtatccttatctgttactgttacac 800

                                                    
Query: 601 catctattctgtcctggaaatgcactcttctgagtggaggt 641
           ||| || ||||||||||||||||||| ||||||||||||||
Sbjct: 801 catttaatctgtcctggaaatgcacttttctgagtggaggt 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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