BAC Information

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BAC

Clone NameMSMg01-149C04
Chromosome2 (Build37)
Map Location 119,292,757 - 119,420,757
singlet/doubletdoublet
Overlap geneInoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307
Upstream geneEif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1
Downstream geneOip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149C04.T7 (MSMg01no149_c04.b1)MSMg01-149C04.TJ (MSMg01no149_c04.g1)
ACCAG351939AG351940
length700699
length of high quality
(start - end)		436 (68 - 503)444 (75 - 518)
definitionCHROMAT_FILE: MSMg01no149_c04.b1 PHD_FILE: MSMg01no149_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:17 2005CHROMAT_FILE: MSMg01no149_c04.g1 PHD_FILE: MSMg01no149_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,420,323 - 119,420,757)(119,292,757 - 119,293,200)
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGAGGATGCGCGG
AATTCCACTGATTTTCGCTTGCCGAAACTAATGCGCCATAAGGGCATTAT
CAGGACGTCCAAGGACAAAGCTGCTTACTACGGTCATAAAAGTTTGGCAG
GGGCGAGTATGAGGTAAAGGCTGCAAGAGTCTATCTGTAATACACATACT
CAAATGAAAATACCAGAGGGAGCCTCTTACAGCAAATCTCAAGGTCAACG
CGCCAGGGACACAAAATGCCCAGAGCTGCAACAGGCCTGTCAACCTCAAC
CGGTGACGCCTTCGGTAAAGGGTCATACAATACAGAGATAGTCTTAGAAA
AATAAAAGGGAGGTGCACACAGCGGCTTCCCGATACGGCCGGCGTACGTG
CAACTCAGAGAACCAGGGCAAAGCACGCAGCGGCCAAAGCGAAGGGCGCA
AGGAAGGGCGTGGAGCGCTGGTAAGGGAAGGACGCGGCCACATACCCGGA
GGCGGCGGAGCCGACCGGACGCGGCTGCGAATGCAAAGCCCTGTCAGGCC
CAGGCCTCGCCGGCTCCCTCATTAGGGTCGCCGCTACCCGTCCCGAGTTG
TGCCGCCCCACCGGCTGCTCGTCTCCCGATAGACAGACGGACTTCTCAGC
TTCACTCACACGGTCCAGCACAAGTACTCCGCTTCCTACGGGAGGCCTGC


CACGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTCTGGCCTTGAACTCAAAGAGATC
CCCCGACCTCTACTTCCCCTGTCCTGAGATAAGGCTGCACTTTATAGGTG
CCTGGCTCTGCAGCATTACTTCTAAAGATACATCTAAACCTAAGGTACAG
AAACTCGATGCTGTATCAGTTGTCCTCTCTTCCCACATGGGTAACAGCTC
CCTCTCATCTGGAGCAAAACTGACTGTTACAGCCAGTGGTGTACTTACCT
CATAAACGAAAACAAGAACTAACATTCACTGATGTGCTTAGCACTGAACA
CGTGATTTAGTTTAAGCAGTAGAAATTGTTTAATTTCCATTTTACAGATA
AGGTCTAAGCTCAAATTTTAATAATGTCTAGGCTTAATGGTACACACCTA
TAATCTTAATTTATAATCCCAAGTAGCACTCATGAGGCAGATGTGGGAAG
CTCAGACTCCAAATCAGCATAGACTACCAAGTGAGACTTGGTTCCCCCCC
ATTTATACACACACACACACAGAGCAGTTCAGTAACTTGCCTACTAAATG
TATAAAAAGCTGAAGTATTTTTCTATTTTGGATTGGTTTTGTCCCTAATA
ATTTTGTGTTCAAATCCTTTTTTGCTGGTTCATTTTTTTTATTACCGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_c04.b1 MSMg01no149_c04.b1 CHROMAT_FILE:
MSMg01no149_c04.b1 PHD_FILE: MSMg01no149_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:17 2005
         (436 letters)



>mm_chr2_119420122_119420957
          Length = 836

 Score =  833 bits (431), Expect = 0.0
 Identities = 434/435 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   ttgccgaaactaatgcgccataagggcattatcaggacgtccaaggacaaagctgcttac 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ttgccgaaactaatgcgccataagggcattatcaggacgtccaaggacaaagctgcttac 577

                                                                       
Query: 62  tacggtcataaaagtttggcaggggcgagtatgaggtaaaggctgcaagagtctatctgt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tacggtcataaaagtttggcaggggcgagtatgaggtaaaggctgcaagagtctatctgt 517

                                                                       
Query: 122 aatacacatactcaaatgaaaataccagagggagcctcttacagcaaatctcaaggtcaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aatacacatactcaaatgaaaataccagagggagcctcttacagcaaatctcaaggtcaa 457

                                                                       
Query: 182 cgcgccagggacacaaaatgcccagagctgcaacaggcctgtcaacctcaaccggtgacg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgcgccagggacacaaaatgcccagagctgcaacaggcctgtcaacctcaaccggtgacg 397

                                                                       
Query: 242 ccttcggtaaagggtcatacaatacagagatagtcttagaaaaataaaagggaggtgcac 301
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ccttcggtaaagggtcaaacaatacagagatagtcttagaaaaataaaagggaggtgcac 337

                                                                       
Query: 302 acagcggcttcccgatacggccggcgtacgtgcaactcagagaaccagggcaaagcacgc 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 acagcggcttcccgatacggccggcgtacgtgcaactcagagaaccagggcaaagcacgc 277

                                                                       
Query: 362 agcggccaaagcgaagggcgcaaggaagggcgtggagcgctggtaagggaaggacgcggc 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 agcggccaaagcgaagggcgcaaggaagggcgtggagcgctggtaagggaaggacgcggc 217

                          
Query: 422 cacatacccggaggc 436
           |||||||||||||||
Sbjct: 216 cacatacccggaggc 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no149_c04.g1 MSMg01no149_c04.g1 CHROMAT_FILE:
MSMg01no149_c04.g1 PHD_FILE: MSMg01no149_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:17 2005
         (444 letters)



>mm_chr2_119292557_119293400
          Length = 844

 Score =  859 bits (444), Expect = 0.0
 Identities = 444/444 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctggccttgaactcaaagagatcccccgacctctacttcccctgtcctgagataagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctggccttgaactcaaagagatcccccgacctctacttcccctgtcctgagataagg 260

                                                                       
Query: 61  ctgcactttataggtgcctggctctgcagcattacttctaaagatacatctaaacctaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgcactttataggtgcctggctctgcagcattacttctaaagatacatctaaacctaag 320

                                                                       
Query: 121 gtacagaaactcgatgctgtatcagttgtcctctcttcccacatgggtaacagctccctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtacagaaactcgatgctgtatcagttgtcctctcttcccacatgggtaacagctccctc 380

                                                                       
Query: 181 tcatctggagcaaaactgactgttacagccagtggtgtacttacctcataaacgaaaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatctggagcaaaactgactgttacagccagtggtgtacttacctcataaacgaaaaca 440

                                                                       
Query: 241 agaactaacattcactgatgtgcttagcactgaacacgtgatttagtttaagcagtagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaactaacattcactgatgtgcttagcactgaacacgtgatttagtttaagcagtagaa 500

                                                                       
Query: 301 attgtttaatttccattttacagataaggtctaagctcaaattttaataatgtctaggct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attgtttaatttccattttacagataaggtctaagctcaaattttaataatgtctaggct 560

                                                                       
Query: 361 taatggtacacacctataatcttaatttataatcccaagtagcactcatgaggcagatgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taatggtacacacctataatcttaatttataatcccaagtagcactcatgaggcagatgt 620

                                   
Query: 421 gggaagctcagactccaaatcagc 444
           ||||||||||||||||||||||||
Sbjct: 621 gggaagctcagactccaaatcagc 644


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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