BAC Information

Click to search

BAC

Clone NameMSMg01-149L08
Chromosome2 (Build37)
Map Location 140,717,977 - 140,718,297
singlet/doubletsinglet
Overlap genenone
Upstream geneTasp1, LOC672103, LOC269365, Esf1, 2310003L22Rik, Sel1l2, 2900006F19Rik, Flrt3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149L08.T7 (MSMg01no149_l08.b1)MSMg01-149L08.TJ (MSMg01no149_l08.g1)
ACCAG352354AG352355
length708822
length of high quality
(start - end)
322 (74 - 395)---
definitionCHROMAT_FILE: MSMg01no149_l08.b1 PHD_FILE: MSMg01no149_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:04 2005CHROMAT_FILE: MSMg01no149_l08.g1 PHD_FILE: MSMg01no149_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGATGGATCCGCGG
AATTCCACTATTTATCTATAGTTTCCACCCAATAATAATTTAGGAAGGTT
CAACTATTTTGGCAATGGTACTAAATTATTCCTTTTGTTGTTCACATGCA
GGCAAACATCCATTTATATTTATCTAAAATAATTGTAAACATTTGAAAAT
AATTACATGGTTAAGTCACTCCAATTAGTTAAAAAAGTCTGGATGAGAAC
ACACCAGAATATTCAAACAACAGCTGAGTAGAAGATTTTAATCTCGTTAC
CACTGATGTCAGCATTCTACTTGATGCAAAACTAATTGCTGCAACTTCCA
CCCACAGCTCCAACTCACTGCATACTCACACTGGATAATCATGGATAGAG
AAAATGCCCTATTAAAGGGAGGTGGAACACAACGTTTTTATCGGGCTTTT
GCATCATGGAGGAAGCTAGAGAACAATGCATCTGTAGTTCTCCGTCTAAG
ACAAAATAGCAATGTATATCTGCAAGTCCACTCTCTGGCACCAAGAGCTC
TAACGACAGCTGTCTCAGATGTGGACTGCACGTGGCTCTGACTAAACATG
AGAAACATGACATGTAGACTCCAATTTAAGATCCCAGTTGCTCTTCCGAT
AATTCATATAACGCCCTAGAACCTGCCTGTCCGCGGCATGAATGTTGCCG
GTTATCCT
TCCCTACTCCTTTCTNCTCCTCCCCCTTCTTCCACTTCTTCCTCCTATNT
ACTTCCCCCCTTCCCTCTCCTCCCTTTCTCCCGCTCCGCCTTCCTTCCCG
CCTCTCCCCTTCCCTTCTTCCCCTTCCGTTCTTCTTCTCCACTTTGTCCC
TCAGCACTGTCGTGTGCTTCATTTCTGCTCCTATTCAATGGCTGTGAAGT
CCGCGTTCGTTGCGGTGGATCCGGAGAGTCCAGGGACGGAGGTGTATAGA
GACTAGGGGTGGTGGACGTGCGCGGTAGTCTGCCCATAATGTGCAATACT
GGGACGCATCGGTTTCTAGTACCGTTATCTATCCTAATAATCACATAAGA
TTGTAACGTATTGGTCACCTTGATGACGGAGAAATTTTTAAATAACAACA
ACAACAATCGCGACTTTAGTCGGCCCCTAGATGACGAACGTTTCTATAAT
CTTTCACCATGATATTGCAGATCTGCAACGACTCGAAGATGAAACAAGAG
TGGACTCGACAAAATGAACGCGGATTGGGCTATAACCAATAATGCAGGGT
TACGCGCAGGTTAAAATGCGACTACAGAGAGGCATATAGTATGGGGTCGG
CATCATAGTTCAGACCTTATCAGATGACGACAAATGAATGAAACTTTAGG
GACATAATCGGCGATCGACGAAATTGGCCACTAGCGCTCGCGGAATACCC
TCCTAATTTTTGTTTATTCGAACACCATAGAGTACATGTTTGCTCGCGCG
GCATACCTTTTTACCCGCGCACCGATAATACACCTATGTAATTTTATCAA
CGTGTGTACCGTGATCGTAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_l08.b1 MSMg01no149_l08.b1 CHROMAT_FILE:
MSMg01no149_l08.b1 PHD_FILE: MSMg01no149_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:04 2005
         (322 letters)



>mm_chr2_140717777_140718497
          Length = 721

 Score =  584 bits (302), Expect = e-171
 Identities = 317/322 (98%), Gaps = 1/322 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccacccaataataatttaggaaggttcaactattttggcaatggtactaaattattcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tccacccaataataatttaggaaggttcaactattttggcaatggtactaaattattcct 462

                                                                       
Query: 61  tttgttgttcacatgcaggcaaacatccatttatatttatctaaaataattgtaaacatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tttgttgttcacatgcaggcaaacatccatttatatttatctaaaataattgtaaacatt 402

                                                                       
Query: 121 tgaaaataattacatggttaagtcactccaattagttaaaaaagtctggatgagaacaca 180
           ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 401 tgaaaataattacatggttaagtcactccaattagttaaaagagt-tggatgagaacaca 343

                                                                       
Query: 181 ccagaatattcaaacaacagctgagtagaagattttaatctcgttaccactgatgtcagc 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 acagaatattcaaacaacagctgagtagaagattttaatctcgttaccactgatgtcagc 283

                                                                       
Query: 241 attctacttgatgcaaaactaattgctgcaacttccacccacagctccaactcactgcat 300
           ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 attctacctgaggcaaaactaattgctgcaacttccacccacagctccaactcactgcat 223

                                 
Query: 301 actcacactggataatcatgga 322
           ||||||||||||||||||||||
Sbjct: 222 actcacactggataatcatgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 721
Length adjustment: 9
Effective length of query: 313
Effective length of database: 712
Effective search space:   222856
Effective search space used:   222856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)