BAC Information

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BAC

Clone NameMSMg01-149O03
Chromosome2 (Build37)
Map Location 125,405,434 - 125,405,653
singlet/doubletsinglet
Overlap geneCep152
Upstream geneSema6d, LOC100043367, LOC100043369, Slc24a5, Myef2, LOC100043375, Slc12a1, Dut, A530010F05Rik, LOC100043698, Fbn1
Downstream geneShc4, Eid1, 3110001I20Rik, Cops2, Galk2, Fgf7, Dtwd1, Atp8b4, Slc27a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149O03.T7 (MSMg01no149_o03.b1)MSMg01-149O03.TJ (MSMg01no149_o03.g1)
ACCAG352477AG352478
length711715
length of high quality
(start - end)
220 (77 - 296)249 (73 - 321)
definitionCHROMAT_FILE: MSMg01no149_o03.b1 PHD_FILE: MSMg01no149_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:18 2005CHROMAT_FILE: MSMg01no149_o03.g1 PHD_FILE: MSMg01no149_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATCAATAATTGCGGCGCTAATACGACTCCTATATTTCGCAGTGCGGCG
GAATTCTGTCTCCTTCTCAAGAATAGTTCAGCTTTCTGCTTCACAAAGTC
CTCTTTAGCTGCTGCAAGCACCTCATTAATTTTATTTCGATGATCCTCTA
AAAACTGCCGATAATCCTCCTCGTTTTGTTCTTGAATCTTGTGGATTTCT
TCCTGTTTTTCTTTGTTCCACTCAGTTCTGGCCTTAGCCACCTCAGTTCT
GACAATCACTGGGACTTCCTCATCCTTCAATTCCAGCTCCTTCTGCAGAG
AGTGTACTTTCTCCTCCAGCTCCTTGATAGACATGACATTTGGCTTCATA
TTTTCCAGCTCACTTTTCCACGTCTCTTTAGCTTCAGAGAGTGCTAGTGA
CATCTAATAGACATATCACCACCCATTTGAACGTTATAGAACTACCCGTG
GTACAGTCCTCCATACCTGGAATTCTCTGACAGACTTTATTATCAATAAC
TCCTTACCATCTGGATTAACCTTTCAAATGATCTACCATTTTTTCATACC
TTTTATATCAATACATCCTGATTTGCTAAAAGAAGCTTTAACAAAAACTG
ACGAACACCCCCGAAGTTTTACATATGTCCCGCTATGATATTCTCTTTCC
CTGTCCCTTATCCATTTCCTCCTTCTCTTTTATAGAATCATTCATTCCCT
TCCCCTCTATG
CGATGAAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTTGCACTTAAAACTGGAAAGTTGCTG
GCTGGGATGACTGTTGTGGGTCACAGTCGGGGTGATTTTGCCTCTCAGGC
CATTTGGCAATACCTGGAGATGGTTTTAGTTATAACCGAGATGGAGGGAG
TGCTTTTAGCTTTAGTTTAGCTGCAGCCAAACATCTCTCAGTGTACAGAC
AGCGCCCATGACAAGCATAAGGTCTAACATGCCAATAGTGCTGAGTCACA
GTAAGAACGTGAGTCTAGATGTATTTCATGAGCTAATAGTGACGGGAGGA
ATAACTCCTAAGGGATTCCTAGAAGCTGTGGCCCGAGCTGGGTCTCGAGT
TTTTCCTTCTCTCCCCTCTCCGGAACCTATACAGTTTTCTGAACCTCTTC
CTTTCCCACTCTATCTCCTACTGCCAATCCCTCAGGGATTAAGCGCACTT
TTCACATGAACATGATTGTCCATACTGCCATTTTATTGGCGATCACGCAC
ACTTGTGCAATTCAGAGGCTATGCCGCTGTTCTCTTGTGGTACATTGATC
CGAAAATTAATGGACCTCTAAAGGTTCACCCACGACACGGTTTTTTTACC
AATATTTGCGCCCCCCGTTATGTTTCTTCTCCAGCCCTTTCCCCTATCCC
TCCTTTCTCCTCGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_o03.b1 MSMg01no149_o03.b1 CHROMAT_FILE:
MSMg01no149_o03.b1 PHD_FILE: MSMg01no149_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:18 2005
         (220 letters)



>mm_chr2_125405234_125405853
          Length = 620

 Score =  402 bits (208), Expect = e-117
 Identities = 217/220 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcagctttctgcttcacaaagtcctctttagctgctgcaagcacctcattaattttatt 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcagctttttgcttcacaaagtcctctttagctgctgcaagcacctcattaattttatt 260

                                                                       
Query: 61  tcgatgatcctctaaaaactgccgataatcctcctcgttttgttcttgaatcttgtggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcgatgatcctctaaaaactgccgataatcctcctcgttttgttcttgaatcttgtggat 320

                                                                       
Query: 121 ttcttcctgtttttctttgttccactcagttctggccttagccacctcagttctgacaat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 ttcttcctgtttttctttgttccactcagttctggccttagccacctcagctctgacaat 380

                                                   
Query: 181 cactgggacttcctcatccttcaattccagctccttctgc 220
           |||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 cactgggacttcctcatccttcaactccagctccttctgc 420


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 620
Length adjustment: 9
Effective length of query: 211
Effective length of database: 611
Effective search space:   128921
Effective search space used:   128921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)