BAC Information

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BAC

Clone NameMSMg01-150J14
Chromosome2 (Build37)
Map Location 39,538,222 - 39,538,467
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC674251, Nr5a1, Nr6a1, Olfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, A930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1
Downstream geneLOC100042604, Magmas-ps, LOC666531, Lrp1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150J14.T7 (MSMg01no150_j14.b1)MSMg01-150J14.TJ (MSMg01no150_j14.g1)
ACCAG352992AG352993
length735721
length of high quality
(start - end)
377 (41 - 417)246 (69 - 314)
definitionCHROMAT_FILE: MSMg01no150_j14.b1 PHD_FILE: MSMg01no150_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:12 2005CHROMAT_FILE: MSMg01no150_j14.g1 PHD_FILE: MSMg01no150_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATT
CCATAAATTTTCCGTTTTTAATAGTTGAGTAGTACTACTTTGTGTAATGT
ACCACATTTTCTGTATCCATTCTTCTGTTGAGGGACATCTGGGTTCTTCC
CAGCTTCTGGCTATTATAAAATAAGGCTGCTATGAACATAGTAGAGCATG
TGTTCTTATTACCAGTTGGAACTTCTTCTGGGTATATGCCCAGGAGAGGT
ATTGCTGGATCTTCTGATAGTATTATGTCCAATTTTCTGACGAACCTCCA
GACTGACTTCTAGAGTGGTTGTACAAGCTTGCAATCCCACCAGCAATGGA
GGAGTGTTCCTCTTTCTCCACATCCTTGACAGCATCTGCTGTCACCTGAA
TTTTTGATCCTAGCCACCCCGACTGGTGTGTTGGAATCTCAAGGCTGTTT
TGATTTGCATTTCCCTGATGATTACGGATGTTGAACATTTTTAGGTGCTT
CTCAGCCAGCCATTAGGTATTCCTCAGTTGAGAATTCTTTGTTTAGCTCT
GTACCCCATTTTTATTAGGGCTATTTGAATTCCCGGAGCCCTGTTTTTTG
AATTCTTTGTAAATATTCGCATACTACCCCCCTTTATCAAAATATAGATG
AGTATAAAAATACCTTCCCCCTCTGTACCGTCGGACTTTCTGTATTTAAT
GAAAGGGATACTTTGATTTTACCATATACTTTGTN
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTGCGAAAAACCATCTTAGCCTCTTTGAATAATGGATTTATAAT
CAGCATGTGTAGCAAATAAATCCATTTGTCCACATGTTTATTTTGGCCAT
AATTTTAATCACAGCAATAAGAAAGGAAACAAAAACAACTATTAATAGGA
GCTTGACTCTCAGATATATACTCATCTTTCAGCTATTGTGACAATTAATA
TAGAATTGTTTTTCTTCTTTCAGGTTTCAATAATTTCTGATGTAGGTAAA
CCATTTCGAGTGCTGCGTGCCTTTCTGAATGGCCCATATTTTAATATCTA
CCAGAAAAATTTTGGCCTAACAAAGAGAACATGGAATGCTTGTCCTTTGG
GGTCAAGATAGCATCACTTGGTATATTTTCTAGTTCCATCAATTTGTCAG
CAAAATTTCATTTTTTTTTACTAGAATGTATTCAGTCCATTGTAGGTATG
TGCTTCATTTTATTATGCATTATTCAGTTGTACGACATTACTTGTTTCCA
TTTTCTAGCAATTGTGAATAGAGCAATAATGAGTATGGCTGAAAAATTAT
CTGTAGAGTAGGATGTCAAGCAACCTGGGCATATGCCAAGGAGCGCTATA
TTTGTTTTTTATGGTAGAGTGATATGTAGCCTTTAAAAAGATTCTCCTCG
ATGATTTCCAGATCGGCTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_j14.g1 MSMg01no150_j14.g1 CHROMAT_FILE:
MSMg01no150_j14.g1 PHD_FILE: MSMg01no150_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:12 2005
         (246 letters)



>mm_chr2_39538022_39538667
          Length = 646

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcttagcctctttgaataatggatttataatcagcatgtgtagcaaataaatccatttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcttagcctctttgaataatggatttataatcagcatgtgtagcaaataaatccatttg 260

                                                                       
Query: 61  tccacatgtttattttggccataattttaatcacagcaataagaaaggaaacaaaaacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccacatgtttattttggccataattttaatcacagcaataagaaaggaaacaaaaacaa 320

                                                                       
Query: 121 ctattaataggagcttgactctcagatatatactcatctttcagctattgtgacaattaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctattaataggagcttgactctcagatatatactcatctttcagctattgtgacaattaa 380

                                                                       
Query: 181 tatagaattgtttttcttctttcaggtttcaataatttctgatgtaggtaaaccatttcg 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatagaattgtttttcttctttcaggtttcaataatttctgatgtaggtaaaccatttcg 440

                 
Query: 241 agtgct 246
           ||||||
Sbjct: 441 agtgct 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)