BAC Information

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BAC

Clone NameMSMg01-150N21
Chromosome2 (Build37)
Map Location 38,278,092 - 38,278,413
singlet/doubletsinglet
Overlap genenone
Upstream geneRc3h2, Zbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp, LOC639491, Dennd1a, LOC100040947, Lhx2
Downstream geneNek6, Psmb7, LOC674251, Nr5a1, Nr6a1, Olfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, A930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150N21.T7 (MSMg01no150_n21.b1)MSMg01-150N21.TJ (MSMg01no150_n21.g1)
ACCAG353190AG353191
length712730
length of high quality
(start - end)
324 (50 - 373)97 (76 - 172)
definitionCHROMAT_FILE: MSMg01no150_n21.b1 PHD_FILE: MSMg01no150_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:32 2005CHROMAT_FILE: MSMg01no150_n21.g1 PHD_FILE: MSMg01no150_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATGCGC
GGAATTCTTCCTGTTTGCGAGTGATGCATTCTGAACATTCTATGCAGATG
TGACATAGCCCAAGGCTTGGGGAGGATTCCTGAAAGGGAGAGGAAATCCA
CTCTGTAGGTTCAGGGAAGGTGAAGATAGGGCTTGCTGCGCCACTCCAGA
GAGATGGATAATGAAACTGAGAGTAAATGTTTAGCAAATTGACAGGTGAC
GTTCTTTTGTTTGTTGATTTTTAAAGAAGCAGGGCTGCGTTTGTCACCAA
TGTTCACAGCAGTATCCATGATGTATATACCATCCAGATGTCCCAGTATA
GACAGACAGGATACACACAGTGTGCTTGGGGAATAACATTTAGCCTTGGA
AAAGAGTGAAGCCATGTTATTCCCACCCCCGCCCTTTGAAAGCACTTCGT
TAAAGGAAAAAAGTTGGACCCGAAAGGGTCAGCATGGTATGGCTTCAGTC
AGGTAAGAAACCTACTATGGGCACATCATACTACTGAACCTGAATACCGG
CATCTTAGTGGCAGGAGAGCAGAGAACTAGCGTTTACCCGTGAGGTGTTT
TGCAGCCCCTAACAAATCCATGCATGGGTGCTCATCTTCCATTAAACATC
CGTCTTGCTTCTTACCATGAGTCACCCATCCCAATTTTGCTTTTTGACAC
CCACCAACCTGT
CCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTGCTGCTCTTTTGTTCTTTCTCA
AAGTCTCAGAAGTCCCTTGGAAACTAAGTATCCTTCCCACCCTAAGCGCC
TCTGACTGACTCTCTCACTCATGGGCTCCAAGATGAGGGAAGTGGGTGGA
ACCCAGGCAGGGTGGTAAAAATCAGCTCCATCTGGAAGAGGACCCTCCCA
GGTGGTGACCTACATGGCTACTGGGTCTTGGGGAGCAAGAGAGGATTCCC
AATACCACTACAGCGGGGTTGGTTTTGCTCAGACAGCTGACAGCCAGGGT
CTGACTGACAGCATGTTTTCTAAATGCTCCAGAAGTCTTTGAGCCCAGTT
AGCCTGCGCCAGCAGGTACACCCCCTTTCTCAGGTCTAACGAGAATAATT
GAGGTCAAAGATCTGAGCTGGTATGACTTGTGCGAATATCCCGATTATCC
CGCGTGAGGAGAGGCCAGCACGTTCTAACGGATGTTAACACCCACGATAC
TGGGAAAAAGGTAAAGTGAATGGGGGAATCTCGATACTCCGAACGTGAAG
ATTGCACAAAAGGCTCAAACTGTACTCAGTACCAAGAAATGACAAAATTT
AACATTTGGCGGAACTGCTTATTTAAAACAAATGTCTTAATATACGTGTA
TTTGCATCGTGTTTAATCACACCCGGCGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_n21.b1 MSMg01no150_n21.b1 CHROMAT_FILE:
MSMg01no150_n21.b1 PHD_FILE: MSMg01no150_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:32 2005
         (324 letters)



>mm_chr2_38277890_38278613
          Length = 724

 Score =  584 bits (302), Expect = e-171
 Identities = 317/322 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcttcctgtttgcgagtgatgcattctgaacattctatgcagatgtgacatagccc 62
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcttcctgtttgggagtgatgcattctgaacattctatgcagatgtgacatagccc 262

                                                                       
Query: 63  aaggcttggggaggattcctgaaagggagaggaaatccactctgtaggttcagggaaggt 122
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaggcttggggaggatgcctgaaagggagaggaaatccactctgtaggttcagggaaggt 322

                                                                       
Query: 123 gaagatagggcttgctgcgccactccagagagatggataatgaaactgagagtaaatgtt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gaagatagggcttgctgcgccactccagagagatggataatgaaactgagagtaaatgtt 382

                                                                       
Query: 183 tagcaaattgacaggtgacgttcttttgtttgttgatttttaaagaagcagggctgcgtt 242
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 383 tagcaaattgacaggtgacgttcttttgtttgttgatttttaaagaagcagggctgtgtt 442

                                                                       
Query: 243 tgtcaccaatgttcacagcagtatccatgatgtatataccatccagatgtcccagtatag 302
           |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 443 tgtcaccaatgttcacagcagtatccatgatgtagaaaccatccagatgtcccagtatag 502

                                 
Query: 303 acagacaggatacacacagtgt 324
           ||||||||||||||||||||||
Sbjct: 503 acagacaggatacacacagtgt 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)