BAC Information

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BAC

Clone NameMSMg01-150N22
Chromosome2 (Build37)
Map Location 88,910,155 - 88,910,657
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218
Downstream geneOlfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150N22.T7 (MSMg01no150_n22.b1)MSMg01-150N22.TJ (MSMg01no150_n22.g1)
ACCAG353192AG353193
length708762
length of high quality
(start - end)
587 (73 - 659)290 (76 - 365)
definitionCHROMAT_FILE: MSMg01no150_n22.b1 PHD_FILE: MSMg01no150_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:32 2005CHROMAT_FILE: MSMg01no150_n22.g1 PHD_FILE: MSMg01no150_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCGG
AATTCCCTTGATTTTCTGTTAGTCTGTTCTATAACAAATGAATGTTATAT
TTAAAGCTCTTTGTGGTTAGTATGGCAGTTTTTGTTCATTTGTTTTATTT
TGTTTTGACCATTTAAGATTAAGAAGTGAACCTTTTTCTACTTTCTATTA
CATTTGGCCTAATTTTAATGTATGTTTACTTTCTCAGTATATTACAAAAT
TATACACGTATACAACTATACATTTTCTTATCTACTCTCAACAGTTAATT
CCCTTTAAAACATGATGAATCTCTTCTCTTTTGATAATCAATTTAATCCA
TATGTAAATATGTATGGACTAGTAATGGAGCATCGTTAACCTAACACTAG
CCAGATCTTCAGGAAAGAACCTTTTTTTTATTCATCTCCTATCAGCTACC
AATAGGGTATTCTCTGTCAATATGATAGGGGCCATTTTCACCAGGAGTTT
GTCTTCATTGATCCTTTGCAAATATTTTGCAGATAACCACAGTTGCTGTG
ATTTCATGAAGGTAATAGCTACATCCTGTACAGAAGATATTTTAGAGCAC
TCTTTTCTATTCTTAGGTATATATTTCCCCCTCTTTTTTTCATATTGTTC
CCTGAATATCAGTAATGCAGTGTGTGTCAGACATTACATAATTGTCCAGT
GTAGAACT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGGACCCCAATGGAAGAGCTAGGG
GAAGGACTGAAGGAGCTGAGGGAGACTGCAACCCTATATGAAGAGCAATA
TCAACTAATCATTCCACACGGGGCTCGCAGGGACTGAAACATTAACCAAA
GGGTATACATGGAGGGAACCAGGACCCCAGGTACACATGTAGCAGAGGAT
GCCCTTATCTGACATTAATAGGAGGGGAGGAGGCTTGATTTTCCCAGCAT
AGGGGGATGCTAGAAGGGTGAGGTGGGATAAAGTGAATGGGTAGAGGAAC
ACCCTAACAGAGGCAAGGGACAAGGAGGATAGAATAGGGGTTAGATGGAC
CCGGTTTATCTTTTTACTTCCCCCCCCCTTACTGAAACTTAGCTTCTGAT
TTAAAAACCAACATCCTTGGTGTGGGGGCGGGAAAATGCAATCGGTATTC
GGGGGGGACCCCCCCACAAACCGAAAATGGGAAATACTTTCACTCCCGGG
GTACCGTGTTATTGGGGCAAAACCGTGGTAAATCCAAAATACCCTGATGG
TCCGGTAACAGTGGTGATGCCGCCCCANTTCTCCAATTAACATATTATCA
CACGAATTTTACACACCTCTAAAAAAATTTTAACCCCTTACCACCCCGGG
TAACTTGTTTAATTACCCCCCTTCCAACTGTTATAAGGCGGCCAAGCCGG
GGGATTTCTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_n22.b1 MSMg01no150_n22.b1 CHROMAT_FILE:
MSMg01no150_n22.b1 PHD_FILE: MSMg01no150_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:32 2005
         (587 letters)



>mm_chr2_88910155_88911141
          Length = 987

 Score =  934 bits (483), Expect = 0.0
 Identities = 498/503 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgttctataacaaatgaatgttatatttaaagctctttgtggttagtatggcagtttt 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 503 tctgttctataacaaatgaatgttatatttaaagctttttgtggttagtatggcagtttt 444

                                                                       
Query: 61  tgttcatttgttttattttgttttgaccatttaagattaagaagtgaacctttttctact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgttcatttgttttattttgttttgaccatttaagattaagaagtgaacctttttctact 384

                                                                       
Query: 121 ttctattacatttggcctaattttaatgtatgtttactttctcagtatattacaaaatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttctattacatttggcctaattttaatgtatgtttactttctcagtatattacaaaatta 324

                                                                       
Query: 181 tacacgtatacaactatacattttcttatctactctcaacagttaattccctttaaaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tacacgtatacaactatacattttcttatctactctcaacagttaattccctttaaaaca 264

                                                                       
Query: 241 tgatgaatctcttctcttttgataatcaatttaatccatatgtaaatatgtatggactag 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgatgaatcccttctcttttgataatcaatttaatccatatgtaaatatgtatggactag 204

                                                                       
Query: 301 taatggagcatcgttaacctaacactagccagatcttcaggaaagaaccttttttttatt 360
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 203 taatggagcatcgttaacctaacactagccagatcttcaggaaagaattttttttttatt 144

                                                                       
Query: 361 catctcctatcagctaccaatagggtattctctgtcaatatgataggggccattttcacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 catctcctatcagctaccaatagggtattctctgtcaatatgataggggccattttcacc 84

                                                                       
Query: 421 aggagtttgtcttcattgatcctttgcaaatattttgcagataaccacagttgctgtgat 480
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  aggagtttgtcttcattgaccctttgcaaatattttgcagataaccacagttgctgtgat 24

                                  
Query: 481 ttcatgaaggtaatagctacatc 503
           |||||||||||||||||||||||
Sbjct: 23  ttcatgaaggtaatagctacatc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)