BAC Information

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BAC

Clone NameMSMg01-151G06
Chromosome2 (Build37)
Map Location 180,125,165 - 180,125,382
singlet/doubletsinglet
Overlap geneEG622283
Upstream geneCdh4, Taf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5
Downstream geneSlco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151G06.T7 (MSMg01no151_g06.b1)MSMg01-151G06.TJ (MSMg01no151_g06.g1)
ACCAG353569AG353570
length706754
length of high quality
(start - end)
218 (66 - 283)90 (61 - 150)
definitionCHROMAT_FILE: MSMg01no151_g06.b1 PHD_FILE: MSMg01no151_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:11 2005CHROMAT_FILE: MSMg01no151_g06.g1 PHD_FILE: MSMg01no151_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTCTCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGXXX
XXXXXXXXXXXXXXXCTTCCAGAAGGAAGACTGAAACATTCAGGACAAAC
CCTTGACTATGGAGTCACCTCAAGAAAACTCAGGATGGAAGCCACCTGTG
GGCTCAGATTCCTCCATGGCATTTGGTCTGAGGTTCCTCAACCTAGCTGC
TTGGATCATCTGACTGCTCAAGCCCCAACATTTAAAGCTGACAGAGGGGT
CCTGCCCTGCTCCCAATCCCGTTCCTACCAAAGGTCATGGTGCCGAACAC
AAGGGGGTACCTGCCACACACAGTCGATTGTGACAACTGACAGCTATACC
CACACTTACACTCTCACATGTACGTGACAAAGAGTCCCCAGGAGTCCTCA
GGCCTGTGGAGGAGATGCTCCCCCCCCTTTTTTTGATGACTCTCCTTTTC
CCCCCCCCTTCCCCTTTTCTACCTTTCTCACCCCCTCCTCTCTCCTGCTC
TCTTACCCTATACCTCTCCTTTCCCCCCCTCCCCCTCCTCCTTCCTTTTC
CCCTCACTCTCCCCCCCTCTTTCCTCTTTTTACCCCTCCTCTTCCCATTC
TTTTTCCCCCCCCCCCTTTCCCCCCCCCCCCCTTTCCCCCCCCCCCCTCC
CTCTCCCCCTCCTCCTTTTTCCCCCCCCCCCCCCCCCTTTCCCTCTCCCT
CCCCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXAGGTCAACCTGGTCTATACTGACTGAGTTCCCGGACGCCCAGGACT
ACACAGAGAGATCTTATCTCCAAAAAACAAAATAACTAGCTGGGTGTGCT
GGCCCGCGCCTTTATTCCCAGCACTTCGCCGGCAGAGGCCGCCGGATTTC
TGAGTTCAGGCCCCTCCTGACTACGCAGCTGTTCCCATACGCCAGTACTA
TCCAGACCCTCCCGTCTCCCACCAGTCTTCATCCCACCACCTTTTCTTTC
CTCTTACCCTCGCCTGCCCCCCCCTATTGCTTTTGCCCCCCCTTCTCCCC
CACCCTGCGCCGGCTGACCGCTTCCTAGTCTCGTTTCCCTGTTAGTTGTC
CCACCCCCCGGTGTAAGTACCCCCCTTACCATTCCCCCCCCCTTTTGCTC
CCTCCGCTCCTTCCTCCTTTTTTCCGCTCTTCCCTCCCTTCTTTCTCCCT
CCCCTACCTCCCCTTTCCCCCCCCTTTCCTGCCCCCTTTTCCCTCCTCTT
TCTTCCCCCTTCCCATCCCCGCTTAATTTTCCCCCTCTTTCCTTCCCTCC
CCCCTGCCTTCCCTTCTTTCCCTTGCCCTCTTTTTGTGCCCCTCTCCTTC
CTTTGTCCCCTCCCCCCCCCCTCGTTACTAACCCCCTTCTTGCTGTTTTA
CTCTTGTCTTTCTTTCGTTTTCTGTTTTCCCCTTACCTGTCTCTTCCCTT
TCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_g06.b1 MSMg01no151_g06.b1 CHROMAT_FILE:
MSMg01no151_g06.b1 PHD_FILE: MSMg01no151_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:11 2005
         (218 letters)



>mm_chr2_180124965_180125582
          Length = 618

 Score =  414 bits (214), Expect = e-120
 Identities = 217/218 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttccagaaggaagactgaaacattcaggacaaacccttgactatggagtcacctcaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 cttccagaaggaagactgaaacattcaggacaaacccttgactatggagtcacctcaaga 359

                                                                       
Query: 61  aaactcaggatggaagccacctgtgggctcagattcctccatggcatttggtctgaggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 aaactcaggatggaagccacctgtgggctcagattcctccatggcatttggtctgaggtt 299

                                                                       
Query: 121 cctcaacctagctgcttggatcatctgactgctcaagccccaacatttaaagctgacaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 cctcaacctagctgcttggatcatctgactgctcaagccccaacatttaaagctgacaga 239

                                                 
Query: 181 ggggtcctgccctgctcccaatcccgttcctaccaaag 218
           |||||||||||||||||||||||| |||||||||||||
Sbjct: 238 ggggtcctgccctgctcccaatcctgttcctaccaaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 618
Length adjustment: 9
Effective length of query: 209
Effective length of database: 609
Effective search space:   127281
Effective search space used:   127281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)