BAC Information

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BAC

Clone NameMSMg01-151J10
Chromosome2 (Build37)
Map Location 78,855,149 - 78,855,515
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667920, OTTMUSG00000016703, LOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3
Downstream geneLOC100040526, Itga4, Cerkl, Neurod1, Ssfa2, Ppp1r1c, Pde1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151J10.T7 (MSMg01no151_j10.b1)MSMg01-151J10.TJ (MSMg01no151_j10.g1)
ACCAG353710AG353711
length725736
length of high quality
(start - end)
371 (49 - 419)343 (78 - 420)
definitionCHROMAT_FILE: MSMg01no151_j10.b1 PHD_FILE: MSMg01no151_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:26 2005CHROMAT_FILE: MSMg01no151_j10.g1 PHD_FILE: MSMg01no151_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTACATTATCCAGCAGAGTATCTGTGCAAGTCATTACATTTT
AATGATCTTTTCAACTTTTCAGAAAGTGTTCTGCATCAATAAGTGAGCGA
TTCCACTACGGCTGGACCAGAGGGAATCATAACCTTCAATTACTTGCTTC
TATACTAAGTGTTTATTTTGTTCTAAGCACAGAGTTACCCCTGGATGGAG
CACTATAATCTTACCAGCGTGACTGTTCTTTCTAGCTTCTTGACTTCTAG
TTCTAGCTATGACACTAAATATGTTGAGGAAAGAGGTTAAAGATTGAAAT
GAGTTTTTCTTTAAAACAAGAGAGACTTATTTAAATACAAATCTTGATAT
GTAACATGATTCACCAGCCACCACCCCCTTTTGTCTGAGTAGGACTGAAT
TTTTTGAGACACTGAAAATAAAAATGTCAAATTCTGTAATGTCAGAAGTA
TTCTATATTTCTGAATTAATTAACATACTACTATACAAGATCTTTACCCA
GCATCCTTTTAAACTTCAGACAGGATTAGGTAATATATTGTCTCTATTAA
TCTACTTGTCTTTTCATCAAGTCACTGAGAGCACTCTGATTCAGCAATGT
TTGCCTGGAGTGCCTTGCCTTGAGTTAATTCTAACTTACTATAGTGTGGC
TTGCCAGCACTACCTCTGGAATATA
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTAAAACAACAAAGAGACACCG
TTCTTTTTTTCTTACTACTCAGATTAGCAGAGATGAAAAAGAAACCGGTG
GCTGGGTGTTGGAAAGGGATGGAGGGACTAGGGCTGCACACCCTGCTGCT
GGCACTGTCAATTAATACAAGTTTTCTGGAAGGCGATTGGCAATATGTAT
CCAACGCCTGAACATGGGCACAGCTTTCCACTGGGTGTTCCTGCTTCTGA
AAATAATACCCAAGTATATATTGTATGCACCAAGTATAGATGGTCCGTGT
TGATCATATCATTGATAATAGCTAGAAAATATTCAATCAAAATGTCTAAC
AAAAATAATGCCTAAAAGATACCCCCCCGCACAAATTCCAGACTATCATA
CAGTAATTAAAATACTAAGGTAGTATATCTGTCATGAAAATATATTATCA
GTGCCTTTGGAAAATTATAGGTTTATTGTTAATGATTTTGTGAGAAAATT
ATCATATATAAAATCAGAGATCACCTAATACAATTTGTAGTAAGATTAAT
TTATTTACAAATGACCATAGTGTTTGCCTATAAGACTGTTCTGTTCTTGA
CTTATCTTCTTTTCTTAATTTCTTTTTTATTTGCAATTGTTACCTATAAC
GTTTTATCCTACTGCATTTTTACACATTTCTAGTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_j10.b1 MSMg01no151_j10.b1 CHROMAT_FILE:
MSMg01no151_j10.b1 PHD_FILE: MSMg01no151_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:26 2005
         (371 letters)



>mm_chr2_78854945_78855715
          Length = 771

 Score =  679 bits (351), Expect = 0.0
 Identities = 363/367 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctacattatccagcagagtatctgtgcaagtcattacattttaatgatcttttc 64
           |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattcctacattatcaagcagagtatctgtgcaagtcattacatttttatgatcttttc 264

                                                                       
Query: 65  aacttttcagaaagtgttctgcatcaataagtgagcgattccactacggctggaccagag 124
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 265 aacttttcagaaagtgttctgcatcaatatgtgagcgattccactacggctggaccagag 324

                                                                       
Query: 125 ggaatcataaccttcaattacttgcttctatactaagtgtttattttgttctaagcacag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggaatcataaccttcaattacttgcttctatactaagtgtttattttgttctaagcacag 384

                                                                       
Query: 185 agttacccctggatggagcactataatcttaccagcgtgactgttctttctagcttcttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agttacccctggatggagcactataatcttaccagcgtgactgttctttctagcttcttg 444

                                                                       
Query: 245 acttctagttctagctatgacactaaatatgttgaggaaagaggttaaagattgaaatga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acttctagttctagctatgacactaaatatgttgaggaaagaggttaaagattgaaatga 504

                                                                       
Query: 305 gtttttctttaaaacaagagagacttatttaaatacaaatcttgatatgtaacatgattc 364
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gattttctttaaaacaagagagacttatttaaatacaaatcttgatatgtaacatgattc 564

                  
Query: 365 accagcc 371
           |||||||
Sbjct: 565 accagcc 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)