BAC Information

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BAC

Clone NameMSMg01-151J17
Chromosome2 (Build37)
Map Location 87,397,762 - 87,398,105
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038
Downstream geneLOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151J17.T7 (MSMg01no151_j17.b1)MSMg01-151J17.TJ (MSMg01no151_j17.g1)
ACCAG353723AG353724
length723662
length of high quality
(start - end)		370 (48 - 417)---
definitionCHROMAT_FILE: MSMg01no151_j17.b1 PHD_FILE: MSMg01no151_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:27 2005CHROMAT_FILE: MSMg01no151_j17.g1 PHD_FILE: MSMg01no151_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTGCTTTGACCAGATTCTCGGCCTGGGTGTGTTTGTTTTGGGT
CATCAATACTTGCCATCCTGCTCAGCCCCAGAGACGTCCAGATGGACAGG
GTTCTCTCCTCTTGCCTGTACCTGTTGGTAGAGAGCCTACACACTCCTAG
GTGTCCTAACATGCCCAGGATCAAAGGATCAAAGGTGCCCTGAGCAGATC
TCGGGTGCTAACTCCACAGCCAGTCTCACAACACACAGAAGAAGCTTCAC
TCCCAGGGGCTCTAACATGCCCTTGACCACAAGATTCCAGAAGCTGGGCT
ACACCAGGATCTCAGGGTCCCAGAGGAATCTGGATTCCCAGGAGCTCTGA
CACAACCAGGATCTCAGGACCACCCACAACGCTGAATTCTAAGAAGTTCT
GACATAACCAGGATCACAGAAAGGACAGGCTCTAGTCAGATATAACAAGG
GCACATAACACTAGAGATAATCAGATAACAAGAGGCAAGCATAAGAACAT
AAGCAACAGAAACCAAGGTTACTTGTCATCATCAGAACCAAATTCTTCCA
TCATAGCAAGTCCTGGGTGTACCATCTCAATGGAAAAGCAAGATTTGGAT
CTAAAAGTCACTTGTCATAATGGTGACAGAGGATTTTAAGAAGGACATAC
ATAACTTCCTGAAAGAAATACAG

GATGACTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTGACAGCGGATTCCAGGATAGTGGGGGTGCGGGGATGGGGGTGNN
NNNNNNNCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCNNNNNNNNCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCTTTTTCCCCCCTCTCCCTTCCCCCTTCTTCTCTCCTCTTCCC
TCTCCCCNCTTTTTTTTTCCNCCCCCNCCCCCCCTCTTCTCTTTTTTTTT
TCCCCCCCCCCCCCCTTTTTTTTTTTTCTTTCTTTTTTTTTTTTTTCAAC
AAGGCCCCCCAAAAAAAAAAAAAAAATTTTAACTATTAACCAATTTTAAA
ACAACCTATATTATACAAACCTTACCCATAGCTTTGTTATATTTCCCTTT
TTCGCTCTTTTCCCCCTCATTTTCCTCCCATTTTTCTTTTTTTCTTCTTC
CTTTTTTTATTCCCATTCCCCATTTCACTCTCTACTACTCCTCTCAATTC
CCATTCTTTTCTCTCCTCTCCTATTTTTCATTCTATCTTTCTCCCGCAAA
TTTGGGACTATTCTGTTGTTGACATTATTATAGCCGCGCGGATGTTATTC
TGTAGTGTCAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_j17.b1 MSMg01no151_j17.b1 CHROMAT_FILE:
MSMg01no151_j17.b1 PHD_FILE: MSMg01no151_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:27 2005
         (370 letters)



>mm_chr2_87397762_87398531
          Length = 770

 Score =  627 bits (324), Expect = 0.0
 Identities = 339/344 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgctttgaccagattctcggcctgggtgtgtttgttttgggtcatcaatactt 64
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 344 gaattcctgctttgaccagattctcggcctgggtgtgtttgttttgggccatcaatactt 285

                                                                       
Query: 65  gccatcctgctcagccccagagacgtccagatggacagggttctctcctcttgcctgtac 124
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 284 gccatcctgctcagccccagagaggtccagatggacagggttctctcctcttgcctgtac 225

                                                                       
Query: 125 ctgttggtagagagcctacacactcctaggtgtcctaacatgcccaggatcaaaggatca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 ctgttggtagagagcctacacactcctaggtgtcctaacatgcccaggatcaaaggatca 165

                                                                       
Query: 185 aaggtgccctgagcagatctcgggtgctaactccacagccagtctcacaacacacagaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 aaggtgccctgagcagatctcgggtgctaactccacagccagtctcacaacacacagaag 105

                                                                       
Query: 245 aagcttcactcccaggggctctaacatgcccttgaccacaagattccagaagctgggcta 304
           ||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 104 aagctccactcccaggggctctaacatgcccatgaccacaagattccaggagctgggcta 45

                                                       
Query: 305 caccaggatctcagggtcccagaggaatctggattcccaggagc 348
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44  caccaggatctcagggtcccagaggaatctggattcccaggagc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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