BAC Information

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BAC

Clone NameMSMg01-151K10
Chromosome2 (Build37)
Map Location 110,804,583 - 110,905,767
singlet/doubletdoublet
Overlap geneLOC668802
Upstream geneLgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12, Muc15
Downstream geneLOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151K10.T7 (MSMg01no151_k10.b1)MSMg01-151K10.TJ (MSMg01no151_k10.g1)
ACCAG353754AG353755
length786763
length of high quality
(start - end)
243 (68 - 310)347 (76 - 422)
definitionCHROMAT_FILE: MSMg01no151_k10.b1 PHD_FILE: MSMg01no151_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:31 2005CHROMAT_FILE: MSMg01no151_k10.g1 PHD_FILE: MSMg01no151_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,905,526 - 110,905,767)(110,804,583 - 110,804,931)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCCAGAGCATCCGCGGAA
TTCACATTAATTAAGCCTTTTCTGTATGATTTTCAGTGTGAACACGGTAA
AATTTAAGGATTATTGACACTGAATGAACTATTTATTTATAGATTTATCA
TATTTTGACACGAGGAAATTTTCATAAAGAAGTATTCATTTGAGTGAAAT
GTAAATGCATGCTCATATCATTATTATTAAAGGGTACATCTCTCTATATG
CGGGCGCATAGCTTTCATGATATTTTCATCTTTAGTTACCAAGAAATAGG
GAAGACCTGCGTCAAACTATATCTGAACCTTATTTTATTGCTCAGCCTCA
AAGAGCAAACTCTAGGCTACTTAGGCAGTATTTCAGTCAAACCACTTACA
AAGAGAATTGTGTCNACANCCCCAACAATATAAATTATCCGGTACCAATG
AATGACCTTGCAACCATTTTGTTAGCCTGCTTTCCCATTTCTCTAACATA
CATATAGTGCCTGAGTCTACACGTCATGTACTCTTACAAGCCTGCATCCC
TTTATTACCCATCCCCAAATATTGTCACATGCCCCCTTTTATCGAACCGC
TCGACTATCGTCTTTTATTGTCCCCCCCTCCCCCCTTTAATTTCTACCAC
CCCCTCCTCCCTCTCTCTCCTGCCCCCCGCCTTGCCTTCCTACCTCCCTT
TTCACCACTTTTGCCCTATTCTTCTTTTTCTTATTCCCACCCCCTTGTTC
TCCTCATCAATACTTCTCTTTCTCCTCCATCCCCCC
CGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCATAAAGGCATGAAGGACACATC
CCTCTAAAGAAACCTCCTAACAGAAGAATGTGATGGATTAAATAACTATA
AAGAATAGAAAGTACAGTAGAGTTTGAGAAATATTTTTAATAGAAACATA
AATAAAATTAATATACATGTAAAAGGTGAATGGACAGGGAACCACTTAGT
AAGAGGATATGTGTAGAGTATAGTGTATCTCTGGTAATGAAGGGACATGG
TATAATAAAGCCTTTTCCTCTCAGGATTGCTGGGATTGCTCAGAGTGAAA
TGCAGTGATAGGAACAAAGATAGGGAGATGCAAGCATTCTACAGAAAGAT
AAAACATATTGTAGGTCTGTGCCCCCCCCCCCCTGGAGATGGCGCGATAA
GTTCCCCACCCTTCCCCCCCCCCTCCCTCGCCTTCCTCCCTCTTCCCCCG
CTTTCACCCCCCCTACCTTTTTTCCCCCCCTTCCTCCCCTTTTCCCCCCC
CCCCACTCCCCCTTCCCTCCCCCCTCTTATCTTCCCCCCTTTTCCCCTCC
CCCCCCTTCTCCTTCTTTCCCCCCCCCTTCCTTTTCCCCCCCTCTTCCTT
TCCTCCCCCCTCCCCCCCCCGTCCCTCACCCCCCACCTTTCCCTTTTTAC
TTACACCCTCCTACTCCCTCTCTTCTCCCCCCCGCCATAACTTCGTCCCC
TTCACCCCTACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_k10.b1 MSMg01no151_k10.b1 CHROMAT_FILE:
MSMg01no151_k10.b1 PHD_FILE: MSMg01no151_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:31 2005
         (243 letters)



>mm_chr2_110905326_110905968
          Length = 643

 Score =  453 bits (234), Expect = e-132
 Identities = 240/242 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttctgtatgattttcagtgtgaacacggtaaaatttaaggattattgacactgaatga 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 442 ttttctgtatgattttcagtgtgaacacagtaaaatttaaggattattgacactgaatga 383

                                                                       
Query: 61  actatttatttatagatttatcatattttgacacgaggaaattttcataaagaagtattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 actatttatttatagatttatcatattttgacacgaggaaattttcataaagaagtattc 323

                                                                       
Query: 121 atttgagtgaaatgtaaatgcatgctcatatcattattattaaagggtacatctctctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atttgagtgaaatgtaaatgcatgctcatatcattattattaaagggtacatctctctat 263

                                                                       
Query: 181 atgcgggcgcatagctttcatgatattttcatctttagttaccaagaaatagggaagacc 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 262 atgcgggcgcatagctttcatgatgttttcatctttagttaccaagaaatagggaagacc 203

             
Query: 241 tg 242
           ||
Sbjct: 202 tg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no151_k10.g1 MSMg01no151_k10.g1 CHROMAT_FILE:
MSMg01no151_k10.g1 PHD_FILE: MSMg01no151_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:31 2005
         (347 letters)



>mm_chr2_110804383_110805130
          Length = 748

 Score =  615 bits (318), Expect = e-180
 Identities = 341/350 (97%), Gaps = 5/350 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcataaaggcatgaaggacacatccctctaaagaaac-ctcctaacagaagaatgtgat 59
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 201 ctcataaaggcatgaaggacacatccctctaaagaaagtctcctaacagaagaatgtgat 260

                                                                       
Query: 60  ggattaaataactataaagaatagaaagtacagtagagtttgagaaatatttttaataga 119
           ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 261 ggattaaataattataaagaatagaaagtacagtagagtttgagaaacatttt-aataga 319

                                                                       
Query: 120 aacataaataaaattaatatacatgtaaaaggtgaatggacagggaaccacttagtaaga 179
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 320 aacataaataaaattaatatacatgtaaaagatgaatggacagggaaccacttagtaaga 379

                                                                       
Query: 180 ggatatgtgtagagtatagtgtatctctggtaatgaagggacatggtataataaagcctt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggatatgtgtagagtatagtgtatctctggtaatgaagggacatggtataataaagcctt 439

                                                                       
Query: 240 ttcctctcaggattgctgggattgctcagagtgaaatgcagtgataggaacaaagatagg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttcctctcaggattgctgggattgctcagagtgaaatgcagtgataggaacaaagatagg 499

                                                             
Query: 300 gagatgcaagcattctacagaaagataaaacatattgtag---gtctgtg 346
           ||||||||||||||||||||||||||||||||||||||||   |||||||
Sbjct: 500 gagatgcaagcattctacagaaagataaaacatattgtagaaggtctgtg 549


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 748
Length adjustment: 9
Effective length of query: 338
Effective length of database: 739
Effective search space:   249782
Effective search space used:   249782
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)