BAC Information

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BAC

Clone NameMSMg01-152H10
Chromosome2 (Build37)
Map Location 144,747,855 - 144,748,094
singlet/doubletsinglet
Overlap genenone
Upstream geneDstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
Downstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152H10.T7 (MSMg01no152_h10.b1)MSMg01-152H10.TJ (MSMg01no152_h10.g1)
ACCAG354330AG354331
length704717
length of high quality
(start - end)
---240 (84 - 323)
definitionCHROMAT_FILE: MSMg01no152_h10.b1 PHD_FILE: MSMg01no152_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:33 2005CHROMAT_FILE: MSMg01no152_h10.g1 PHD_FILE: MSMg01no152_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCTCXXXXXXXXXXXXXXXXXXXXGATCCTATTTCCGACNGCCAGG
NGAANCNAAGATTTTCCGCACCCGAGGANNACCANCNAANAGGGGNNNNC
CCGCGGCGCCGCAAAGCGCACCCCCGCANAGCANGGNGAGANAGCGACCC
GCNAGACCAGGCGACNCCCGCCNCACANAACGCCACCACCGACACCACAA
GGGCCCCAAACCCGCGACCCCACCNCAACCCAANCACCNCCCCAAAGCNC
TGTTTCCAAANACCAGCAACACAGACCCGGGAACCCAGNCCAGGGCACGA
ACCCCCCACAGACACTTTTTTTTTTTTGCACCNACCCAACGCCACCCCAC
CNNNAAAGGATTATCCCCACCCCCACACATTACGCACAATTATAAAAACT
TGTATGCGATCCAGCGAGATGACTCAGTGAATGCACTAGACTGCCGCCAC
GGCTGATTACCACGTCTGACTTTTACAATTCACACGGTGCAAGGACACAT
CTCCCACCAACCTATTGTCCTGTCACCCCCACCCGCGTAAATAACTCATA
ACTGTGTTTAAAGTTAATAACACTGTTACATCCAAAAGAACCGAACGTGG
TGGTGCCTCACTGGTGCCTCCACACTCCAACCTGCACAGAAAACGGCTTC
TTTTTTTTATTCCCGTAACGACCGCTAAGGCCAGACGCATGCTCATCCTT
GCCT
TTTCTCTCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGCTCAGAATAGG
ACTGCATGAAAACATGGATACCATAGAAGTACATGTCATGGGAGTGGGGA
CAGGGTAGGATATTGAGAGGGTAGGAAGATATTCTCAGCCTCCAGCACAG
CCTTCCCTCACAATGAGCCTGGTTAGACTTAGCCTGGATGTTTACATCTC
GGACTGCATCTGGAAATGCTTTCTAAAATACCTCTAGAATCACAGACATG
GAGCATTCATAGATAAGTTCGGGGTCTACTATAAGGGGGAAAAATCAAGC
AATCCCTGGGCCTCCTCGGAGCTGGGAAAACAGTGCTGACTCCTGGTGTG
TCCTCAGAAGCTAACTGATCTGTCCCTGCAAGATAATCTCTCAGGAAATT
GACTGCCCGAGAGCACATCTGACTCACTTCTTTTCTAGCAAGAGGACAGG
CAAGCTCCTGCTTGTCCATGCATTAAATTGGCTTTTTATCGCTCTGATCT
TTTTAATATCTTTAAATGTTCTCCATGTCTCTCATTACATCGATGCCCTC
TAGACGCAAACAAATTGTCTGGCATTCCGACGACAATCTCCTAACGCCAT
TGGTAAATGGCTTTGTACCACATGGCCCAGGTCATATCTGGTCCTCCTTA
ACTAGAACTTGATACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_h10.g1 MSMg01no152_h10.g1 CHROMAT_FILE:
MSMg01no152_h10.g1 PHD_FILE: MSMg01no152_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:33 2005
         (240 letters)



>mm_chr2_144747655_144748294
          Length = 640

 Score =  418 bits (216), Expect = e-121
 Identities = 234/240 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcagctcagaataggactgcatgaaaacatggataccatagaagtacatgtcatggga 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 440 tttcagctcagaataggactgcatgaaaacatggataccatagaagtaaatgtcatggga 381

                                                                       
Query: 61  gtggggacagggtaggatattgagagggtaggaagatattctcagcctccagcacagcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtggggacagggtaggatattgagagggtaggaagatattctcagcctccagcacagcct 321

                                                                       
Query: 121 tccctcacaatgagcctggttagacttagcctggatgtttacatctcggactgcatctgg 180
           || |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| 
Sbjct: 320 tctctcacaatgagcctggttagacttagcctggatgtttacatctcagactgtatctgt 261

                                                                       
Query: 181 aaatgctttctaaaatacctctagaatcacagacatggagcattcatagataagttcggg 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaatgttttctaaaatacctctagaatcacagacatggagcattcatagataagttcggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)