BAC Information

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BAC

Clone NameMSMg01-152K20
Chromosome2 (Build37)
Map Location 40,783,677 - 40,784,286
singlet/doubletsinglet
Overlap geneLrp1b
Upstream geneLOC100042604, Magmas-ps, LOC666531
Downstream geneLOC100042629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152K20.T7 (MSMg01no152_k20.b1)MSMg01-152K20.TJ (MSMg01no152_k20.g1)
ACCAG354488AG354489
length713733
length of high quality
(start - end)
584 (71 - 654)---
definitionCHROMAT_FILE: MSMg01no152_k20.b1 PHD_FILE: MSMg01no152_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:50 2005CHROMAT_FILE: MSMg01no152_k20.g1 PHD_FILE: MSMg01no152_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCACACTGATTTACAGAGTGTCTGCACTAGTTTGCAATCCCATAA
ATTATTAATGATGGTTCTCCTTAACCTAAATCTTTAACACACATCATTGT
ATTATTGACTTCAAAGACTTGTTTTCATAAACCTTTTGTTGTACTTAGGA
TAGAAAACTATTTTTTCCTAATTAAGTTTGACCTTTTCACTATTTTATTA
ATTTGATTTGGAAAACATTTTAAATTTTATATACATTTTGAAAAGTTTAG
TGGATTCTACATTTAACTGTTACACTAAAATTACAGCCATTGTGAGATCC
AGTGTCACAAAGAATGTGTTCTGGTTTTTATTAACAGGATATAATCTTTC
TTGAATGCTTATTAAATTCAAGTATTATTTTCAACTTTTCTATATACTTT
ATGTACAAAGTTTGTCATTTGCAAGTAAATCAACTAATTTTATTCCTTCC
AGAACAAATTCTTCTTTATTCATCTTTTGCTTGCTTATCATAATTTTTGA
ACTCCAGTTCAGTAGATGTTAACTTTCTTATTCTTCCTTTGCTCCTTTTT
TTTCTATTCATATTTTGAAGACAACTTAAATAGGTGAAATAAATTATATA
GCATAGTATGATGGCACCATTCATGAAATTATTTTGTGATTATCCTTACT
TTTAACTAATATN
ATCCGTACACCGTCCCCCCCCCCCCCCTCCCCCATTTCGAGAACCGGAGG
CGGGGCGCCTGCTCCAAAATTAGGGACCTATAGAGTTTCCCGCAATCAGT
GCATTCAAACCCACACCCGACAGAACCAGTTTTTCTATGTGTTATATAGA
CCACGCCTACGACTAATCGCCAGACTCATCTGAATCCACGATATCTGACG
AGGCCCGCCTGCGGAGTCCAGACTCATACTTGGGGCTCTTTCCTTCCATA
GGACGAACTTGAGCTAAAACATGTTGACGACCATCCGGACTCACCACGAT
GATACCTGCGTAACCACCCCTCTCACCCCTCGTCCCCCAAACGCGACCAC
CCCGCTTTTGCATCCCTGCCCACCCCAAGAAATCTCAGCATCGCATTTGG
AGCTTTTTTAAATTCTTCACCAATTTTTATCACCCACCCCCCCCTTAACA
TTATCTTACATTGATCATATTCTCCCGTCAACCCCAACATTCAAGATAAT
TGCGAAAACACCGCTATCACCAAAACCGGGTGAGCCAACACCGCCACCAA
ACAACCCCCAACCTCCGGGCAAAAACGGCAAAAAAAGGTACCCCAACCGG
GGCCAACATGTCGCGCAATCCCCGGCCAAATGGGAAACCATTGAAAACCC
CACCCTGCATCACCCGCTAAAACATTTGTTTGCCACAAAATACCACACCG
CCGTCCCGCACACACCGGCCGACACCCCCCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_k20.b1 MSMg01no152_k20.b1 CHROMAT_FILE:
MSMg01no152_k20.b1 PHD_FILE: MSMg01no152_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:50 2005
         (584 letters)



>mm_chr2_40783677_40784660
          Length = 984

 Score =  998 bits (516), Expect = 0.0
 Identities = 574/610 (94%), Gaps = 26/610 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagtgtctgcactagtttgcaatcccataaattattaatgatggttctccttaacctaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gagtgtctgcactagtttgcaatcccataaattattaatgatggttctccttaacctaaa 551

                                                                       
Query: 61  tctttaacacacatcattgtattattgacttcaaagacttgttttcataaaccttttgtt 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 550 tctttaacacacatcattgtattattgacttcaacgacttgttttcataaaccttttgtt 491

                                                                       
Query: 121 gtacttaggatagaaaactattttttcctaattaagtttgaccttttcactattttatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gtacttaggatagaaaactattttttcctaattaagtttgaccttttcactattttatta 431

                                                                       
Query: 181 atttgatttggaaaacattttaaattttatatacattttgaaaagtttagtggattctac 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 430 atttgatttggaaaacattttcaattttatatacattttgaaaagtttagtggattctac 371

                                                                       
Query: 241 atttaactgttacactaaaattacagccattgtgagatccagtgtcacaaagaatgtgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 atttaactgttacactaaaattacagccattgtgagatccagtgtcacaaagaatgtgtt 311

                                                                       
Query: 301 ctggtttttattaacaggatataatctttcttgaatgcttattaaattcaagtattattt 360
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 310 ctggtttttattaacaggatataatcttttttgaatgcttattaaattcaagtattattt 251

                                                                       
Query: 361 tcaacttttctatatactttatg--------------------------tacaaagtttg 394
           ||||||||| |||||||||||||                          |||||||||||
Sbjct: 250 tcaacttttatatatactttatgtacaaagtttgtcatttgcaagtaaatacaaagtttg 191

                                                                       
Query: 395 tcatttgcaagtaaatcaactaattttattccttccagaacaaattcttctttattcatc 454
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 190 tcatttgcaagtaaatcaactaattttattccttccagaagaaattcttctttattcatc 131

                                                                       
Query: 455 ttttgcttgcttatcataatttttgaactccagttcagtagatgttaactttcttattct 514
           |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| 
Sbjct: 130 ttttgcttgcttatcataatttttgaactctatttcagtagatgttaactttcttattca 71

                                                                       
Query: 515 tcctttgctccttttttttctattcatattttgaagacaacttaaataggtgaaataaat 574
           ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 70  tcctttgctccttttttttctattcatattttgaagaaaacttacataggtgaaataaat 11

                     
Query: 575 tatatagcat 584
           ||||||||||
Sbjct: 10  tatatagcat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)