Query= MSMg01no153_h09.b1 MSMg01no153_h09.b1 CHROMAT_FILE:
MSMg01no153_h09.b1 PHD_FILE: MSMg01no153_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:50 2005
(533 letters)
>mm_chr2_143012639_143013571
Length = 933
Score = 507 bits (262), Expect = e-147
Identities = 510/728 (70%), Gaps = 205/728 (28%)
Strand = Plus / Plus
Query: 9 gaattcctgtcttcggaacattgagcactgtagacaagacttctgtgcttatctacaagg 68
||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 4 gaattcctgccttaggaacactgagcactgtagacaagacttctgtgcttatctacaagg 63
Query: 69 aataagcaagggtgtcttaacacactgagtggatgacagtggtctctggaagagtgtttg 128
||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||
Sbjct: 64 aataagcaagggtgtcttagcacactgggtggatgacagtagtctctggaagagtgtttg 123
Query: 129 caagaaactgaacttgaggaaacctggactacctgaggatgaagatgacttctcttgccc 188
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 124 caagaaactgaacttgaggaaacctggactacctgaggatgaagatgacttctctttccc 183
Query: 189 aggctcctacttagggcaggcagctcagctgtgaaggtaactgatctc---atcccctct 245
||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 184 agggtcccacttagggcaggcagctcagctgtgaaggtaactgatctcctcatcccctct 243
Query: 246 gcattgtgcttcctttccatgtgttctt-------------------------------- 273
||||||||||||||||||||||||||||
Sbjct: 244 gcattgtgcttcctttccatgtgttcttgtaaattttttttttagatttattttattaat 303
Query: 273 ------------------------------------------------------------ 273
Sbjct: 304 atatgagtacactgtagctgtcttcagacactccagaagagggagtcagatcttgttgcg 363
Query: 273 ------------------------------------------------------------ 273
Sbjct: 364 gatggttgtgagccaccatgtggttgctgggatttgaactttggacctttggaagagcag 423
Query: 274 --------------------------------------------------aataagtgat 283
||||||||||
Sbjct: 424 tcgggtgctcttacccactgagccatctcaccagccccccatgtgttcttaataagtgat 483
Query: 284 ttcttgacaggttctgtattcaaagaaagaaatcaaaatgtactgagtggccatgacaga 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 484 ttcttgacaggttctgtattcaaagaaagaaatcaaaatgtactgagtggccatgccaga 543
Query: 344 cacttgggcttggcatttttgatgagttatttatatatgtgatctttatagaaacccaaa 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 cacttgggcttggcatttttgatgagttatttatatatgtgatctttatagaaacccaaa 603
Query: 404 gagaagaaaaatatgtcctgtatttcctacagagaaatgtttgcatttcgctagaggaac 463
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 604 gagaagaaaaatatgtcctgtatttcctacagagaaatgcttgcatttcgctagaggaac 663
Query: 464 ccttgaaagccaaaaagattttgagacttacagtgattatgatgagtgggattgcaggcc 523
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 664 ccttgaaaaccaaaaagattttgagacttacagtgattatgatgagtgggattgcatgcc 723
Query: 524 ttttattg 531
||||||||
Sbjct: 724 ttttattg 731
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no153_h09.g1 MSMg01no153_h09.g1 CHROMAT_FILE:
MSMg01no153_h09.g1 PHD_FILE: MSMg01no153_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:50 2005
(409 letters)
>mm_chr2_143159999_143160807
Length = 809
Score = 777 bits (402), Expect = 0.0
Identities = 408/410 (99%), Gaps = 1/410 (0%)
Strand = Plus / Minus
Query: 1 cacacccctaagccccttaccccataaaaacccctagctttccagcctcgtggctgacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 cacacccctaagccccttaccccataaaaacccctagctttccagcctcgtggctgacat 739
Query: 61 ccggtatctcctgtatgggatgcatgttggtccggagctgtcctcatgtaattacatcaa 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ccggtatctcctgtgtgggatgcatgttggtccggagctgtcctcatgtaattacatcaa 679
Query: 121 gagatggtccttcgtga-ttttttgggtgcacgccgaatcggaattgggtgggggtttcc 179
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gagatggtccttcgtgatttttttgggtgcacgccgaatcggaattgggtgggggtttcc 619
Query: 180 ccactaggtctaacaggtcccctgagtttggaggaaagaaagtaagagggagagagtaga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ccactaggtctaacaggtcccctgagtttggaggaaagaaagtaagagggagagagtaga 559
Query: 240 agttgatagagcattgggaagccatccataaagcagggtactggcccaatgaactatcag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agttgatagagcattgggaagccatccataaagcagggtactggcccaatgaactatcag 499
Query: 300 atccttggttctctcacaaggagggaacagggagctgtggggctctagacacaatggagt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 atccttggttctctcacaaggagggaacagggagctgtggggctctagacacaatggagt 439
Query: 360 atcgatggagagtgctgggctcactggatctgactaccatcctgagttcc 409
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 atcgatggagagtgctgggctcactggatctgactaccatcctgagttcc 389
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
