BAC Information

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BAC

Clone NameMSMg01-153H19
Chromosome2 (Build37)
Map Location 129,833,165 - 129,833,728
singlet/doubletsinglet
Overlap genenone
Upstream geneZc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35
Downstream geneTgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153H19.T7 (MSMg01no153_h19.b1)MSMg01-153H19.TJ (MSMg01no153_h19.g1)
ACCAG355072AG355073
length811726
length of high quality
(start - end)
159 (46 - 204)564 (71 - 634)
definitionCHROMAT_FILE: MSMg01no153_h19.b1 PHD_FILE: MSMg01no153_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:52 2005CHROMAT_FILE: MSMg01no153_h19.g1 PHD_FILE: MSMg01no153_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAGCGAGCCGCGG
AATTCCTTTGCTGTCATATAACCTGCTTCTTCAGGATTCCAATGTAGATT
GAAGACCAGCAGCTCTTAGGAATCCTTTGGGACTCTAGACCCAGACTGGG
ACTGACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTACTCTCACTTGTGCTTTCTTGTATATGTCTACTTGTGTCTATATCTG
TTTATTTTCTTGTTTATCTTTATGTGTAATATTTTCTTCCCAACGTGTTT
TTTAGCACCGTCCCTTTTTTTTTTTTTTGTCCCATGGCACTTTTCAACTG
AATGTTAGTTATTTGCTCTCCCCCTCTCTTCTATTTTCTCCTTTTTCATG
GTCATATATTTTCCCCTTTTTTTATACTATCACTTTATTCACCTTTCTTT
TTCCTTAAATATTTTTTTTTCATTATTTTATTTATTATTTACTTTCTTAT
TCATCTGTATTGCTTATTATATCTTTTATAGGTTTCTTTCTACCTTTATC
TTCCTCTTATATACTTATTCCTATTATTCTCTTTTCCCCTGATTTTATTT
CTTTTACTCTTCGACTCTTCTTTTATTCCATCATCCTTTTATTCCCTTTT
CCTTCCCTCCTTTTTATCTTTCTCTATCTATCATATACTTTATACCCTAT
CTTTTGTATTCCTCGCTGCCCTGACCTTTTTTCCTTTCTTTTTTCTTAAC
TATCAACCCTTCGCCTGTACTTTTTCTCCCTTTCTTACCCCCTCTCTTTC
TTTCTTATTTT
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTAAGTGATGTCTTTACTTGAACAGTCAGAC
AGGAAGCAACAGAAAATTTTGAAGATGATAAACTAATAGCCAAAGGGGTG
TGTATCACTTGTAGTCAACTTCCAGAAAGAGTGATAGATACTGATGACGG
CAATAAGTGAGGTCAGCTTATTAAAGAAGATGCATTTCAGATAAACCAGG
AAGGAGAAGATCAAGGAAAGGCATGCACGGTGACAGAGAGTCTTCATTCC
ATGGGCTGCACATGGCTTTCTGTGGGGCACACAGTGCTTGCAGTCAGTAG
GGAAGACTGGAAAGGCTGGCCTCCACTTTTCATCCCAATGGTCACCCTAA
GTTCTTAGACCTAGAAGAGAAATCGGTGGGTAGGTCTCAACCCCCTGCAA
GACTCTGTTGGAAGGCTTCTCTGCCAAACTCTTGGCCATTCATGAGCACA
GGTGGGAAAAAACAAACGCAGAAAAGAGACTACAACCCACCGTCTGGTTC
CTGATGGTACACCTGCAGGGCCAAGTTGTAGCCAGAGAGAACACCAGGAA
ATGATGGTGTCAAAGGACAGCTTGCTGGAGGATGTAGCTTGTCAGGAAGC
AAACACACCAGAGGCCATAAAGCCCAGCTTTTTATTTTTCTGATAATGGA
CCAAGGCCTACAGATAAATGCTTAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_h19.g1 MSMg01no153_h19.g1 CHROMAT_FILE:
MSMg01no153_h19.g1 PHD_FILE: MSMg01no153_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:52 2005
         (564 letters)



>mm_chr2_129832965_129833928
          Length = 964

 Score = 1075 bits (556), Expect = 0.0
 Identities = 562/564 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagtgatgtctttacttgaacagtcagacaggaagcaacagaaaattttgaagatgata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 taagtgatgtctttacttgaacagtcagacaggaagcaacagaaaattttgaagatgata 705

                                                                       
Query: 61  aactaatagccaaaggggtgtgtatcacttgtagtcaacttccagaaagagtgatagata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 aactaatagccaaaggggtgtgtatcacttgtagtcaacttccagaaagagtgatagata 645

                                                                       
Query: 121 ctgatgacggcaataagtgaggtcagcttattaaagaagatgcatttcagataaaccagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ctgatgacggcaataagtgaggtcagcttattaaagaagatgcatttcagataaaccagg 585

                                                                       
Query: 181 aaggagaagatcaaggaaaggcatgcacggtgacagagagtcttcattccatgggctgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 aaggagaagatcaaggaaaggcatgcacggtgacagagagtcttcattccatgggctgca 525

                                                                       
Query: 241 catggctttctgtggggcacacagtgcttgcagtcagtagggaagactggaaaggctggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 catggctttctgtggggcacacagtgcttgcagtcagtagggaagactggaaaggctggc 465

                                                                       
Query: 301 ctccacttttcatcccaatggtcaccctaagttcttagacctagaagagaaatcggtggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ctccacttttcatcccaatggtcaccctaagttcttagacctagaagagaaatcggtggg 405

                                                                       
Query: 361 taggtctcaaccccctgcaagactctgttggaaggcttctctgccaaactcttggccatt 420
           | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tgggtctcaaccccctacaagactctgttggaaggcttctctgccaaactcttggccatt 345

                                                                       
Query: 421 catgagcacaggtgggaaaaaacaaacgcagaaaagagactacaacccaccgtctggttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 catgagcacaggtgggaaaaaacaaacgcagaaaagagactacaacccaccgtctggttc 285

                                                                       
Query: 481 ctgatggtacacctgcagggccaagttgtagccagagagaacaccaggaaatgatggtgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ctgatggtacacctgcagggccaagttgtagccagagagaacaccaggaaatgatggtgt 225

                                   
Query: 541 caaaggacagcttgctggaggatg 564
           ||||||||||||||||||||||||
Sbjct: 224 caaaggacagcttgctggaggatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)