BAC Information

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BAC

Clone NameMSMg01-153P08
Chromosome2 (Build37)
Map Location 20,610,561 - 20,610,866
singlet/doubletsinglet
Overlap geneEtl4
Upstream geneLOC100041302, LOC433406, LOC654360, LOC667609
Downstream geneArhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153P08.T7 (MSMg01no153_p08.b1)MSMg01-153P08.TJ (MSMg01no153_p08.g1)
ACCAG355387AG355388
length719779
length of high quality
(start - end)
608 (47 - 654)305 (136 - 440)
definitionCHROMAT_FILE: MSMg01no153_p08.b1 PHD_FILE: MSMg01no153_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:27 2005CHROMAT_FILE: MSMg01no153_p08.g1 PHD_FILE: MSMg01no153_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTTCCTTCTGTACTTCATTTTTAATAGGGTTATTTGATTT
TCTGGAGTCCATCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCC
TATTTAATTTAGGGTTGGTAAAGATCCTCTCCCAATCTGTTGGTGGCCTT
TTTGTCTTATTGAGAGTGTCTTTTGCCTTACAGAAGCTTTGCAGTTTCAT
TAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTC
TGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCGAGGCTTTCCCCCACT
TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGAT
CCACTTACACTTGAAATTTGTCAAGGAGGTAAGAATGCACCAATTCACAT
TCTTCTACATGATAAACTCCAGTTGTGCTAGCACAATTTGTTGAAAATAC
TGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGA
CCATAGGTGTGTGGATTCATTTCTGGATCTTCAATTCTAGTCCATTGATC
TACCTGTCTGTCGCTGTACCAGTTCCATGCAGTTTTTTTTTTTTTTTTTT
AATCAAATTTGCTCTGTAGTACAGCTTGAGGTCAGGCATGGTGATTCCAC
CAGAGGTTCTTTTATTGTT
CTCTCCCTCTTCCTTTCCCCCAACCTAATTCCATTNCCCTTTTATCCCCC
TCCCCNCCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAATATCTAGGGC
GACACAGTAAGATTCTACCTTTAGGGGAAAAAATGCAAGAAAATCCTTAT
ATTTATTTGAACACCATTGACATCCATACACTTGAACAAATGTTACTATG
ATAAAAGAATAGATCACTAAAACCAGCCAACATCACTTCCTGGAAGTATG
ATTTCCTAGGCATTGTTTCTGGTGTGGAAACCTGCTGCCATCTCTCTTCC
TTTATAATTCTTCCAGAACACTGGCTCATCCTCTTCTCATTGATAAGGAG
CAGAGGCTAAAGGGGGTGAATTATGTACAGGTCAGAGACTAACATGGTGA
ACTACAATAACTGTTGCAAGAATACAGCGGTGTCATTATTGAGCCTCACA
GAGCCATGGTAGGCGGCATTAAACTGCACCCAGAGCCTGAATAGCTTGCC
TTCACTCCACTCACTTTGCTAGGACTACTTAGTAATCTTCCAGCTCATGA
CCTTGCTTCTTCTCTTGGTAGCAGTACTCTTCATAAAGAGGCCCAGGTTG
CTCACGCAAACTCCCAGGCCACCTCCCACCCCTCTTCTGATCCCACCTTG
ACCGGACCCATCCCCAAAGCACCACCGGTTAAGTTAGAGAACTAGCTCTA
ACCCCTAGATGGCTTTAGTTACCTTGACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_p08.g1 MSMg01no153_p08.g1 CHROMAT_FILE:
MSMg01no153_p08.g1 PHD_FILE: MSMg01no153_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:27 2005
         (305 letters)



>mm_chr2_20610361_20611067
          Length = 707

 Score =  509 bits (263), Expect = e-148
 Identities = 295/307 (96%), Gaps = 4/307 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaatatctagggcgacacagtaagattctacctttaggggaaaaaatgcaagaaaatc 60
           ||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||| 
Sbjct: 201 cagaatatctagggcgacacagtaagattctacctttagga-aaaaaatgtaagaaaatt 259

                                                                       
Query: 61  cttatatttatttgaacaccattgacatccatacacttgaacaaatgttactatgataaa 120
           |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 260 cttaaatttatttgaacaccattgacatccatacacttgaacaaatgttagtatgataaa 319

                                                                       
Query: 121 agaatag---atcactaaaaccagccaacatcacttcctggaagtatgatttcctaggca 177
           |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agaataggagatcactaaaaccagccaacatcacttcctggaagtatgatttcctaggca 379

                                                                       
Query: 178 ttgtttctggtgtggaaacctgctgccatctctcttcctttataattcttccagaacact 237
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 380 ttgtttctggtgtggaaacctgctgtcatctctcttcctttataattcttccagaacact 439

                                                                       
Query: 238 ggctcatcctcttctcattgataaggagcagaggctaaagggggtgaattatgtacaggt 297
           |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 440 ggcttatcctcttctcattgataaggagcagaggctaaagggagtgaattatgtacaggt 499

                  
Query: 298 cagagac 304
           |||||||
Sbjct: 500 cagagac 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 707
Length adjustment: 9
Effective length of query: 296
Effective length of database: 698
Effective search space:   206608
Effective search space used:   206608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)