BAC Information

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BAC

Clone NameMSMg01-153P12
Chromosome2 (Build37)
Map Location 18,141,422 - 18,141,794
singlet/doubletsinglet
Overlap geneDnajc1
Upstream geneNebl, LOC100041319, LOC100041047, 1700113O17Rik, A930004D18Rik, 2810030E01Rik, Mllt10, LOC641254
Downstream geneLOC100041388, LOC623325, LOC625815, Commd3, Bmi1, EG667477, LOC100041448, BC061194, LOC667493, LOC100041479, Pip5k2a, 4930426L09Rik, LOC667521, Armc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153P12.T7 (MSMg01no153_p12.b1)MSMg01-153P12.TJ (MSMg01no153_p12.g1)
ACCAG355395AG355396
length748719
length of high quality
(start - end)
464 (42 - 505)373 (77 - 449)
definitionCHROMAT_FILE: MSMg01no153_p12.b1 PHD_FILE: MSMg01no153_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:28 2005CHROMAT_FILE: MSMg01no153_p12.g1 PHD_FILE: MSMg01no153_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGGACCTTCCGAAGAGCAGCCGGGTACTCTTCTCTGCTGAGCCATCTCA
CCGGCCCCCTCTCAGGTTATTTTTAACTTTTATTTTTTTGTTTTGTTTTG
TGAGACAGGGTCTCACTGTATCCTTGGCTGGTCTAGCACTTGTATTAACT
GTGAACTTACAGCCTTGGCTTCCTGAGTGCGGTGATTAAAGCATGCATCA
CCACATCTGATTTTTTTTCTTTTTTCTTTAAAAAGACTTATTTTGTGTGT
GAAAAATCTGAGTGCATTTATATCTGTGTACCATGTATGTAAAGTGCCCA
TGGAGGCCAGAAGATAGCATTGTGTCCTCTGGAACTGTAGTTTCAGACTG
TTGTGAACTGCCATGTGGGTGTGCCCCCCACCCCTCTCCATGTTGGCTAC
AGGAGACCGAGTCTCAGAAAACAAAGTTGTTTGGGGTTGGAGAGGTGACT
TAGTGGTTAAGAGTGTATTTTGCTTTTGTAGAGGTCTTGGCCTTTGTTCT
CATCCTCCCCTATAACCTGTGATTTCCGCTTGTCCATATCTGACCCTCTC
CCACCCTTTTACAGTCATTGTTACTGCTCACCTATTTCCTTGTTGTAACA
GTGTGTGACATCCTGCCCGCTCCTATTCTTCATTTTATCTTTTTAGTTAG
CTTTTTTACTCCTTCCTTCTGAAACAAATTCTCATTAATCACCCCAAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTGGCTTGTCCAGTAAGTGTTAG
GTTTCCTTCCTAAAGGACCCCTGCTCTTTGATCGAAGTCTGGCCATGTAT
ACCCAGTATTCCTCAGAGCAGTGGCAAGGACAAAGCTCCAACCCCCATGT
CTAGCACGTTCAGAGAATGCCTTCCCTTGTGGGTAAGACTGGGGTGTTCC
TAGTGAAGAAGGTAAATTAGACAGTGCATGTCAGATGCCCAGCACACTGT
CCAGGTTCACCATGCCCTTTCTCGTGTACTGTGTCCTTTCCTAGGAATGA
CCAGGCTCTCTGAACTTAAGTCAAACGGTCAGAATTCCAGGCCAATCAAG
ATAGCCACAGCCTTGCCAGATGACATCATCACTCAGCGCGAGGACTCAGT
AGGGGCCATGGAGGATGAGGAGCACGAGGCTGCTGAGGGTGAGCAGGAGT
CAGCGACCACAGAAGCCCGACCTCGGAGGCGGAAGTCAGCCAGGGCGGCT
GACGCTGTAACCAGAGTGGAGCCACATTATAACCTCACAGGAAACAGCCC
TAAAGACTTTGATACCTCAGACCATAACGATTTCTGTGACGAAGAGAATC
CACGAAAAGAAAGAACTCGTGTTGCATAGGAGGCGCGCACTCTCAGTCCG
CCCAAATTTCTGTATTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_p12.g1 MSMg01no153_p12.g1 CHROMAT_FILE:
MSMg01no153_p12.g1 PHD_FILE: MSMg01no153_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:28 2005
         (373 letters)



>mm_chr2_18141222_18141994
          Length = 773

 Score =  683 bits (353), Expect = 0.0
 Identities = 368/373 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttggcttgtccagtaagtgttaggtttccttcctaaaggacccctgctctttgatcgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 cttggcttgtccagtaagtgttaggtttccttcctaaaggacccctgctctttgatcgaa 514

                                                                       
Query: 61  gtctggccatgtatacccagtattcctcagagcagtggcaaggacaaagctccaaccccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gtctggccatgtatacccagtattcctcagagcagtggcaaggacaaagctccaaccccc 454

                                                                       
Query: 121 atgtctagcacgttcagagaatgccttcccttgtgggtaagactggggtgttcctagtga 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 atgtctagcgcgttcagagaatgccttcccttgtgggtaagactggggtgttcctagtga 394

                                                                       
Query: 181 agaaggtaaattagacagtgcatgtcagatgcccagcacactgtccaggttcaccatgcc 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 agaaggtaaagtagacagtgcatgtcagatgcccagcacactgtccaggttcaccatgcc 334

                                                                       
Query: 241 ctttctcgtgtactgtgtcctttcctaggaatgaccaggctctctgaacttaagtcaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 333 ctttctcgtgtactgtgtcctttcctaggaatgaccaggctctctgaacttaagtcaaat 274

                                                                       
Query: 301 ggtcagaattccaggccaatcaagatagccacagccttgccagatgacatcatcactcag 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 273 ggtcagaattccaggccaatcaagatagccacagccttgccagatgacatcatcacgcag 214

                        
Query: 361 cgcgaggactcag 373
           || ||||||||||
Sbjct: 213 cgggaggactcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)