BAC Information

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BAC

Clone NameMSMg01-154I10
Chromosome2 (Build37)
Map Location 142,991,407 - 142,991,750
singlet/doubletsinglet
Overlap geneLOC668915
Upstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor
Downstream geneLOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154I10.T7 (MSMg01no154_i10.b1)MSMg01-154I10.TJ (MSMg01no154_i10.g1)
ACCAG355794AG355795
length702701
length of high quality
(start - end)
39 (406 - 444)346 (219 - 564)
definitionCHROMAT_FILE: MSMg01no154_i10.b1 PHD_FILE: MSMg01no154_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:11 2005CHROMAT_FILE: MSMg01no154_i10.g1 PHD_FILE: MSMg01no154_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGGCTATGCCTGTTATATGTGGGTATGGAAGTGTGCACTTGCAGACA
CAATTGCTTGTTAAGAAGAAGCAAGCTCTTGTGAACCCACTAGTTCAAGG
CCAGGCTGGACAATATGATGAAATCATATCTTTAACTTAGCTAATGAATG
AAGCACACCACCGAAAAACCCAAAATTGTTTGCTCATGTAAACTCTGTTT
ACATTCTTACAGAGCATAGGTCTCACCAGTAAAAACCTAATAAAGTTACC
TCCAATGACAAATAATAAATCAACTTCTTCCACAGTAATTTCCAGGCCAA
CACATCCAAGGCAACATGTCACGCCTCTGCCTCAGAAAAGAAAAGGAGGA
AGGGAAGGAGAAGAAAACCTCTCTTCTATACAAGTCTCTCATTGTGAGTC
ATTGTGTGAGTTAATTTATCACTTTCTGCTTCTCAGATTTCAGGTCGAAT
ATACTATCCCCAAGGCACCTGGCGAGCCCTTTCTCTCAGCCTCGGGATTA
GCTTCCAATGTATCTCTTACTGAGACATTCCAGCGGCAAAGCTATTAGCT
TCTGATGACTTGACAGGAGGCGATTATCTCTGTCTAAAGCAGATTATCAG
TCTCCCTAAAAGTAGTTCCGAAAGTAACAACGTCACTGTGTATTCTTGTC
AA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGGTTCTGGATTTACTTTACCAGTGTGTT
ATTTTGGGATTTCCCAATAGACAGAGACTGTTCTATTGGATCCATAGTAA
GCTCAGCATTTTTTCTCGATTTTAAAATTATCTGTTCTTTCTTCTTCAGC
TTAAAGGCAATGGCTGGGACTGACAAAATGGTGACAGAGAACAGTAGGAC
CTGCAGACATGCTTGCCTTGTCAAGGTTTTCATGACTTCTCCATTAAACA
GGAAGTTTACCTATTCATCTGAGATAGCTAATACTAGCAAGGATGTGGTC
TTCTTATTTAATTACGAGAATGTTTGCTTGTTAGTAAAGGTGATCAGAGG
ATACTACCAAATGCCTTTCAGTATCAGAGAAGTGATGTTATTCTTTTGCC
AATTAATATGTTTCAATGTAACAGTTGAACATTGTGACAATTCTCTCAAC
ATAGAAGCAACCCCGAACTCCTAGAGTAAGTGCAACTCAGCCACATGACC
GTGCTCTCTTGGTGCATTCTTGGATGATTTTTGGTAATGATTTATTTAGA
TGTGGGCATCGAGTTTTGACCTAGCTATTGTTTGTAAATAGAATTCACAC
TTCCTTTGTCAGCGCTTTGAAAGTGTTTCCCTGGCCTTAACAACTTCCTT
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_i10.g1 MSMg01no154_i10.g1 CHROMAT_FILE:
MSMg01no154_i10.g1 PHD_FILE: MSMg01no154_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:11 2005
         (346 letters)



>mm_chr2_142991207_142991952
          Length = 746

 Score =  588 bits (304), Expect = e-172
 Identities = 334/344 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgacaaaatggtgacagagaacagtaggacctgcagacatgcttgccttgtcaaggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 actgacaaaatggtgacagagaacagtaggacctgcagacatgcttgccttgtcacggtt 260

                                                                       
Query: 61  ttcatgacttctccattaaacaggaagtttacctattcatctgagatagctaatactagc 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 ttcatgacttctccattaaacaggaagtttacctatttatctgagatagctaatactagc 320

                                                                       
Query: 121 aaggatgtggtcttcttatttaattacgagaatgtttgcttgttagtaaaggtgatcaga 180
           |||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 321 aaggatgtggtcttctcatttaattaggaggatgtttgcttgttagtaaaggtgatcaga 380

                                                                       
Query: 181 ggatactaccaaatgcctttcagtatcagagaagtgatgttattcttttgccaattaata 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggatactaccaaacgcctttcagtatcagagaagtgatgttattcttttgccaattaata 440

                                                                       
Query: 241 tgtttcaatgtaacagttgaacattgtgacaattctctcaacatagaagcaaccccgaac 300
           ||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 441 tgtttcaatgtaacaattgaacattgtgacaattctctcaacatggaagcaaccctgaac 500

                                                       
Query: 301 tcctagagtaagtgcaactcagccacatgaccgtgctctcttgg 344
           ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 tcctagagtaagtgcaactaagccacatgaccgtgctctcttgg 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)