Query= MSMg01no154_m06.b1 MSMg01no154_m06.b1 CHROMAT_FILE:
MSMg01no154_m06.b1 PHD_FILE: MSMg01no154_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:29 2005
(513 letters)
>mm_chr2_79011115_79012028
Length = 914
Score = 917 bits (474), Expect = 0.0
Identities = 499/512 (97%), Gaps = 10/512 (1%)
Strand = Plus / Plus
Query: 5 gaattccttttacca---cccccagtctctagtcacttaaatatgtgaaatattgtataa 61
||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttttaccaaaaccc--agcctctagtcacttaaatatgtgaaatattgtataa 262
Query: 62 agacacaatattagagttcttctattatagtagatattttattttctatgaaatatctct 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agacacaatattagagttcttctattatagtagatattttattttctatgaaatatctct 322
Query: 122 taataaagagtttttgtatgtcaaatgataaagttatctctgatccctggttttagtaga 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 taataaagagtttttgtatgtcaaatgataaagttatctctgatccctggttttagtaga 382
Query: 182 aatggaagcttttccaacttggagcttggaatatatattcaacatatcagttttggacta 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aatggaagcttttccaacttggagcttggaatatatattcaacatatcagttttggacta 442
Query: 242 gcatatatttgttttgttttgttttgttttgttttagtttttttccgagaaagggtttct 301
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 443 gcgtatatttgttttgttttgttttgtttt-----agtttttttccgagaaagggtttct 497
Query: 302 ctgtgtagccctggctgtcctggaactcactctgtagaccaggctggccgagaactcaga 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctgtgtagccctggctgtcctggaactcactctgtagaccaggctggccgagaactcaga 557
Query: 362 aatccgcctgcctctgcctcctaagtgctgggattaaaggcatgcactagcacacccggc 421
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 558 aatccgcctgcctctgcctcctaagtgctgggattaaaggcatgcaatagcacacccggc 617
Query: 422 ttttggactagcgtatatttaatgtctttgaatgtaaggagaaagaagcaggcttgaata 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ttttggactagcgtatatttaatgtctttgaatgtaaggagaaagaagcaggcttgaata 677
Query: 482 aatagaacagatgccaggagactgatgctcag 513
||||||||||||||||||||||||||||||||
Sbjct: 678 aatagaacagatgccaggagactgatgctcag 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 914
Length adjustment: 10
Effective length of query: 503
Effective length of database: 904
Effective search space: 454712
Effective search space used: 454712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no154_m06.g1 MSMg01no154_m06.g1 CHROMAT_FILE:
MSMg01no154_m06.g1 PHD_FILE: MSMg01no154_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:29 2005
(410 letters)
>mm_chr2_79157779_79158589
Length = 811
Score = 764 bits (395), Expect = 0.0
Identities = 407/411 (99%), Gaps = 1/411 (0%)
Strand = Plus / Minus
Query: 1 ccacctgctacc-acatcaacaaaatcagctttgcttacatggaaagtgagcttcagctt 59
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 611 ccacctgctaccaacatcaacaaaatcagctttgcttacatggaaagtgaggttcagctt 552
Query: 60 ctcggccatgcatgtttctggctcgttttcttcgctagatccatacacaaatgaagttgg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ctcggccatgcatgtttctggctcgttttcttcgctagatccatacacaaatgaagttgg 492
Query: 120 gttcacaagcctgatgggaacaagggcaacttgaatgtcctgctcttctgatgagggcct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gttcacaagcctgatgggaacaagggcaacttgaatgtcctgctcttctgatgagggcct 432
Query: 180 gtgcagtccatcttagaggcagagtacagcacatttacaaggtaacgcagaaaccttttg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gtgcagtccatcttagaggcagagtacagcacatttacaaggtaacgcagaaaccttttg 372
Query: 240 gtttcctggtcagatagaagctctaacgactgatgtaacaggaaggccaggtagccatgc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gtttcctggtcagatagaagctctaacgactgatgtaacaggaaggccaggtagccatgc 312
Query: 300 ctattcaggccaatatatgcacttgcctgccttccccacacctgcaggctggtttccatt 359
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctattcaggccaatatatacacttgcctgccttccccacacctgcaggctggtttccatt 252
Query: 360 tgcactttttttggccctgaaacaattcatgcaaactagaaaaaaacttag 410
||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 251 tgcactttttttggccctgaaacaattcatgcaaacttgaaaaaaacttag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 811
Length adjustment: 9
Effective length of query: 401
Effective length of database: 802
Effective search space: 321602
Effective search space used: 321602
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
