TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTACATGCTCAGGGAACTTTTGGTAAGATCTTTAAAGCTCCTGCA
TGTTTGAAAGCTTCTAGTAGAATTTCTTCACAGAATAGCTTTTTTTTTTT
TTTCTTTTTAAAGAGACGGCTTAATGGGGATTGTAGAAAGTAATGCACAG
GTGTTTTTATACTAACTGATCTGGAAGAGCGAGTGCACAGTGAAGTCCAG
AGCTGCTGCATATAGAAGCTCTTTAAATAGAGCAGTAACAAATCAATAAT
GAGAACAGAGACAGAAACAAGGAGAAGAGAAAGAGAGAGAGCTCACCATG
CTTCTGAGGGAGAAAAGGTGACCAGCAATGTGAGATCTTAGATGGAATTG
CCATAGGCTACTAGCTTCTACATGCAGGCAGTTGAGGATGTTTAGCTGGG
ACTAGATGTAACTGAGCAACGAAAGTTGAGGGCAGGTGGAGAGGTACGGA
GCTAAGAGTATTGAAAAGGGCGCACTTCTCCAGGCTAGAGATAAGTAATG
CCCAGCAATTGTGCCAAAAAGGCCAGTTGAAAGTGAACAACTGTGTGTGT
TTGTGGTTTTTTTTTTTTTTTTTTTTNNTNNNNNNNNNNNNNNNNANNTT
TTTCTCTNTTCNNNTTTTTTTNTCCCCCCCCCTCTTTTTTCTTTCCCCCT
TTCTCCTCCCCTTTATTCTTTTTCCTTCTCCCTCCTC

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGCCTGGCTGGTTCAACTCAGCTGTTC
TGGCTCAAACTCTTCTCCAAGCTGACTGATTCAATCCGGCTTTGACTGAA
TTGCTCTGCTTGGCCTCATACTAACTTTGGCAATATCTTCTAATTTTCTA
GCTCCTTCTCATTCTTTGGCTCACTCTGTCTCCACCTGTGTCTAGCTTGT
TCCCTATCTGCAACCTGTCTCTCTGTAACTGTAAAACTGCCTCCTCCCTC
TCTCTACACTGTTCCCTCAGGTAGCTTCCTTTTCTTCTTTCTTCTTGTGA
GAGTTGGGCATATCTTATTCTGTCAAATCTTTCTCTGATTCATCGATTTG
TCTGCCAGTCAGACATCACTTTCAAACATGGGTGCTTCCTTCTACAAACT
AACTTTACCTTCATTGTTTGGGATTAAACCTATGTACTAACGGTGTGTCT
GTATTCCGGCCAGAGGGATTATTAAAGGTGTATGCTGAGGACTGAGCCAC
AACACAACTAGAAACAGCGTTTTTCAGTAAATAAAACAATCACTTCAGTT
TCACAGTGTGATAAATATCCTGCAACACTGCATGCTACTTCCTTGAAGAA
AACATAGATCAATGGAATAGAATTCATAGTGAAAAATAGTCTTAAATTTC
ATACACTTAAGGTCAATTGGCTTTTGTTGTAAACATTTN

Query= MSMg01no155_a03.b1 MSMg01no155_a03.b1 CHROMAT_FILE:
MSMg01no155_a03.b1 PHD_FILE: MSMg01no155_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:48 2005
         (583 letters)



>mm_chr2_19495512_19496490
          Length = 979

 Score =  986 bits (510), Expect = 0.0
 Identities = 546/562 (97%), Gaps = 9/562 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctacatgctcagggaacttttggtaagatctttaaagctcctgcatgtttgaaa 64
           |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgcatgctcagggaacttttgataagatctttaaagctcctgcatgtttgaaa 264

                                                                       
Query: 65  gcttctagtagaatttcttcacagaatagcttttttttttttttctttttaaagagacgg 124
           ||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||
Sbjct: 265 gcttctagtagaatttcttcacagaatagctttttttttt----ctttttaaagagacgg 320

                                                                       
Query: 125 cttaatggggattgtagaaagtaatgcacaggtgtttttatactaactgatctggaagag 184
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttaatggggattgcagaaagtaatgcacaggtgtttttatactaactgatctggaagag 380

                                                                       
Query: 185 cgagtgcacagtgaagtccagagctgctgcatatagaagctctttaaatagagcagtaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgagtgcacagtgaagtccagagctgctgcatatagaagctctttaaatagagcagtaac 440

                                                                       
Query: 245 aaatcaataatgagaacagagacagaaacaaggagaagagaaagagagagagctcaccat 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 aaatcaataatgagaacagagacagaaacaaggagaagagaaagagagagagcttaccat 500

                                                                       
Query: 305 gcttctgagggagaaaaggtgaccagcaatgtgagatcttagatggaattgccataggct 364
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 gcttctgagggagaaaaggtgaccagcaatgtgagatcttagatggagttgccataggct 560

                                                                       
Query: 365 actagcttctacatgcaggcagttgaggatgtttagctgggactagatgtaactgagcaa 424
           |||    |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 act----tctacatgcaggcagttgaggatgtttagctgggactagatgtaactgagcaa 616

                                                                       
Query: 425 cgaaagttgagggcaggtggagaggtacggagctaagagtattgaaaagggcgcacttct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 617 cgaaagttgagggcaggtggagaggtacggagctaagagtattgaaaagggtgcacttct 676

                                                                       
Query: 485 ccaggctagagataagtaatgcccagcaattgtgccaaaaaggccagttgaaagtgaaca 544
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 677 ccaggctagagataagtaatgcccagcaattatgccaaaaaggccagttgaaagtgaaca 736

                                 
Query: 545 actgtgtgtgtttgtggttttt 566
           |||||||||||||||| |||||
Sbjct: 737 actgtgtgtgtttgtg-ttttt 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 979
Length adjustment: 10
Effective length of query: 573
Effective length of database: 969
Effective search space:   555237
Effective search space used:   555237
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)