BAC Information

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BAC

Clone NameMSMg01-155A04
Chromosome2 (Build37)
Map Location 110,321,894 - 110,475,083
singlet/doubletdoublet
Overlap geneSlc5a12
Upstream geneBdnf, LOC100043427, Lin7c, Lgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799
Downstream geneMuc15, LOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155A04.T7 (MSMg01no155_a04.b1)MSMg01-155A04.TJ (MSMg01no155_a04.g1)
ACCAG356146AG356147
length740734
length of high quality
(start - end)
653 (45 - 697)598 (73 - 670)
definitionCHROMAT_FILE: MSMg01no155_a04.b1 PHD_FILE: MSMg01no155_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:49 2005CHROMAT_FILE: MSMg01no155_a04.g1 PHD_FILE: MSMg01no155_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,321,894 - 110,322,542)(110,474,486 - 110,475,083)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCAAAATAAATATCCTGATTTGCTCTAACCATTGCCAGTGAGGAAG
TAAATGATTGTCCACTAAGTTTGTAAAAGAGATTCTGGCCTTAAAGGTGA
CTATTTCTGGTCTTAGACACAGAAAGTACGTCAAGACTTCAGTGAGTCAG
GATGTGTTGTTTTCAGATAGGACCCAACTTAATCCTGACAGCTCCGTGAT
TTCTGGTTGTGCTTGCAGCTTATGATCTTGGGGTTCACAATTCAAACCCA
AAGAGAACATCAGCAAACTAGTCAAAGAGCTTGTGATGTTTGAGGGACTG
GATTGGGAAGAAATGCAAACCACAGAACAATATGATTTTTTGTTTTGTTT
TGTTTTCAAGATGCTGTAGTTTGCTAAGACTACCCAATCCAAAAGCATTT
TACAAAATCAACAATGACATGTGATGATTTCGAGGAGCCACCTTTAAAAA
GATCATTTAGAACAGGCAGATTGGTAATTTCAAAAACATTAAAGCTATAT
TATGGACTTTTAAAGCAAATTATCTTCAATATTGATCGTAAACCTCCTGA
TTACATCTTATTTGAAGTTCTTTTGTGGAGACATTGCTATAACTTGATCT
TTTTTCAAAGATAACCAAAATGGTTGCTTTACAACCATTTTGTTGTANAG
CAAACAGCATGTTGAAAACCATTTTAACCTTACATAATTG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATCTCTTTTATCACTTTGATAAGAAAA
GGGCATATGAGATTAAAATTTTTCCCCTGTCTTTTGTTATTTACTATTTG
TAGTATTTCCTTTGCTGGAGATAGGATTAATTCATCATGATATAACAGCT
TAATTTTGAAGATAATTACTAGCTTTCATTTGAAGACTCAATAAAATACT
AAAGATGCTTATCTCCTCTTGAATGTGGAGAGGACTTGCAATACCTTATG
TCTCAGAGCAACAAACAACAGAAATTCAATCCAAGAGGTTCTATTTTAGA
TACATATATATTCAAATGTTCCCTGTGAATCTGTAGTCTATGAAAGAACA
GAGATTTATTTTTACTTCCTTTTTATTGCCATTTAGTATTTTTATTTGGA
GACAAACTTAAAGCTACTCTACCTTGGTGTCTACTTCAAAGTCTACATTC
CTTCTGAGTTTCTCCTACAATTAGAGGACAATATAGACAAATGTGTACTC
TTAGCTCTGGAGCTGCTTACAGGGCATGGCATGGCATTTAGCTATGCTTA
CCTTGCTTAAAATGTCAGAAGAGCATCTTATACCCACTTCCAGAACTTTT
TTCTGGTGAGGATTTAATGTAGACTCCACAGGAAACCATGTTTGTGTACC
ACATATTGGGGTGAGCTTGAATGCCCACTATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_a04.b1 MSMg01no155_a04.b1 CHROMAT_FILE:
MSMg01no155_a04.b1 PHD_FILE: MSMg01no155_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:49 2005
         (653 letters)



>mm_chr2_110321690_110322742
          Length = 1053

 Score = 1208 bits (625), Expect = 0.0
 Identities = 643/649 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccaaaataaatatcctgatttgctctaaccattgccagtgaggaagtaaatgat 64
           |||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccaaaataaagattttgatttgctctaaccattgccagtgaggaagtaaatgat 264

                                                                       
Query: 65  tgtccactaagtttgtaaaagagattctggccttaaaggtgactatttctggtcttagac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtccactaagtttgtaaaagagattctggccttaaaggtgactatttctggtcttagac 324

                                                                       
Query: 125 acagaaagtacgtcaagacttcagtgagtcaggatgtgttgttttcagataggacccaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acagaaagtacgtcaagacttcagtgagtcaggatgtgttgttttcagataggacccaac 384

                                                                       
Query: 185 ttaatcctgacagctccgtgatttctggttgtgcttgcagcttatgatcttggggttcac 244
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttaatcctgacagttccgtgatttctggttgtgcttgcagcttatgatcttggggttcac 444

                                                                       
Query: 245 aattcaaacccaaagagaacatcagcaaactagtcaaagagcttgtgatgtttgagggac 304
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aattcaaacccaaagagaccatcagcaaactagtcaaagagcttgtgatgtttgagggac 504

                                                                       
Query: 305 tggattgggaagaaatgcaaaccacagaacaatatgattttttgttttgttttgttttca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tggattgggaagaaatgcaaaccacagaacaatatgattttttgttttgttttgttttca 564

                                                                       
Query: 365 agatgctgtagtttgctaagactacccaatccaaaagcattttacaaaatcaacaatgac 424
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agatgctgtagtttgctaaggctacccaatccaaaagcattttacaaaatcaacaatgac 624

                                                                       
Query: 425 atgtgatgatttcgaggagccacctttaaaaagatcatttagaacaggcagattggtaat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atgtgatgatttcgaggagccacctttaaaaagatcatttagaacaggcagattggtaat 684

                                                                       
Query: 485 ttcaaaaacattaaagctatattatggacttttaaagcaaattatcttcaatattgatcg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttcaaaaacattaaagctatattatggacttttaaagcaaattatcttcaatattgatcg 744

                                                                       
Query: 545 taaacctcctgattacatcttatttgaagttcttttgtggagacattgctataacttgat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 taaacctcctgattacatcttatttgaagttcttttgtggagacattgctataacttgat 804

                                                            
Query: 605 cttttttcaaagataaccaaaatggttgctttacaaccattttgttgta 653
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cttttttcaaagataaccaaaatggttgctttacaaccattttgttgta 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no155_a04.g1 MSMg01no155_a04.g1 CHROMAT_FILE:
MSMg01no155_a04.g1 PHD_FILE: MSMg01no155_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:49 2005
         (598 letters)



>mm_chr2_110474286_110475283
          Length = 998

 Score = 1094 bits (566), Expect = 0.0
 Identities = 590/598 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catctcttttatcactttgataagaaaagggcatatgagattaaaatttttcccctgtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 798 catctcttttatcactttgataagaaaagggcatatgagattaaaatttttcccctgtcc 739

                                                                       
Query: 61  tttgttatttactatttgtagtatttcctttgctggagataggattaattcatcatgata 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 738 tttgttatttactatttgtagtatttcctttcctggagataggattaattcatcatgata 679

                                                                       
Query: 121 taacagcttaattttgaagataattactagctttcatttgaagactcaataaaatactaa 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tagcagcttaattttgaagataattactagctttcatttgaagactcaataaaatactaa 619

                                                                       
Query: 181 agatgcttatctcctcttgaatgtggagaggacttgcaataccttatgtctcagagcaac 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 agatgtttatctcctcttgaatgtggagaggacttgcaataccttatgtctcagagcaac 559

                                                                       
Query: 241 aaacaacagaaattcaatccaagaggttctattttagatacatatatattcaaatgttcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aaacaacagaaattcaatccaagaggttctattttagatacatatatattcaaatgttcc 499

                                                                       
Query: 301 ctgtgaatctgtagtctatgaaagaacagagatttatttttacttcctttttattgccat 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 498 ctgtgaatctgtagtctatgaaagaacagagatttatttttacttcctttttattgtcat 439

                                                                       
Query: 361 ttagtatttttatttggagacaaacttaaagctactctaccttggtgtctacttcaaagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttagtatttttatttggagacaaacttaaagctactctaccttggtgtctacttcaaagt 379

                                                                       
Query: 421 ctacattccttctgagtttctcctacaattagaggacaatatagacaaatgtgtactctt 480
           ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ctacatttcttctgagtttcccctacaattagaggacaatatagacaaatgtgtactctt 319

                                                                       
Query: 481 agctctggagctgcttacagggcatggcatggcatttagctatgcttaccttgcttaaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 agctctggagctgcttacagggcatggcatggcatttagctatgcttaccttgcttaaaa 259

                                                                     
Query: 541 tgtcagaagagcatcttatacccacttccagaacttttttctggtgaggatttaatgt 598
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 258 tgtcagaagagcatcttatacccacttccagaactttttcctggtgaggatttaatgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)