BAC Information

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BAC

Clone NameMSMg01-155B13
Chromosome2 (Build37)
Map Location 162,535,107 - 162,535,500
singlet/doubletsinglet
Overlap genenone
Upstream genePtprt, LOC100043895, LOC100043896
Downstream geneLOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155B13.T7 (MSMg01no155_b13.b1)MSMg01-155B13.TJ (MSMg01no155_b13.g1)
ACCAG356208AG356209
length737738
length of high quality
(start - end)
453 (67 - 519)394 (77 - 470)
definitionCHROMAT_FILE: MSMg01no155_b13.b1 PHD_FILE: MSMg01no155_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:56 2005CHROMAT_FILE: MSMg01no155_b13.g1 PHD_FILE: MSMg01no155_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAGATACTTCAAGGTTGGTGTGCTGCACTCCCAGGGATCTGCCTA
CTATGGCCTTCAGCCTTCCAGATGCCGGAGTTAAAGGCCACTCACACCAT
GTCCAGTCTTTTCATCTTTTCTTTTGAGAACAGCATCTTCCACTGAACCT
TGGGCCCCTGGGATGTCTATATAGCTCATCTGTAAGCTCTGGGTATGTGC
CGTTACCATACGGTTCCCTTCCCTACCACAACGTTAGGGTTACAGATGGC
TAATCTTGGCTTGTCCTGTGGGTACGTGGGATTCGAACTCAGGTCCTCAT
GCTTGTGTACTAGGAACCTTACTGGATAAGTCATCTCTCTCCCATGGNCC
TAGGTTATTTCTTAATTACTGAGCAGTTTCTTTAAAAAGATTTTATTTAT
TTATTTATTTATTTAATTTATTTATTTGCAAGGCAGAGAAAAACTTGAGA
GAATCAGCTCTCTCATGCTACCATGAGACTCCTGGACTAAACCCAGGTTT
GGTAGCTGGGGCTTTCCCACCCTTACACCCACCCAATGGACAAGCACCAA
TCCCCAACATTATGAATGACCCTCTGCTATGCTTGCAGACCAAAGTCTAG
CATACCATCCTAGGAGAGGTTTCAAAGCCCACCAGCCCATTGGTACCGAT
ACCGAGACCCCTCAGCCCAACATTCGCCGGCACTTCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGTCCTGGATCTAGCCTCCAGTG
GGGACTTCCTGCCAAGGAGTTAAATTAGTTGGGTTTTCATGCATATATAA
TGAACCCAAAGCAATAAATAAGGCTTTATGGGTGGCAGATTTATCCATTT
TTATGGTGCAAAAGTAAAATTCGCTGAGTGTTTACGTCAGACAGGAGCTG
CCCCTCACCCCCACAGGTATAAATCACAGTGGCCTGGGATGGTGGCATGG
AGGATCAGGGGCCTGGCTTATAAGACTGTCAATAATTACAGCCTTGGAAA
GCTCACATGACTCACAGGCAGAATCTACTAGGAGCATAGGTGGAAAAACA
ATTTACTAGGCACACCTCAGCTACTGCTAAACCCATAAAGATGTTGTTTC
AAAGGATTAGTGTGCTCACCAGGACCCAGGCATGCAGTGTCTAGACATGC
ATGGAGGATGGCCAATCCTAAAGAGGAACTCTGGGTCCTTCCAGCCCAGT
GCTTTGTACCAGAACCATCTGGAAGGCTGGTCCAAATACACACTGTGGCT
ATAGAGATAGCTCAGGTACTAAAATGACTGTTACGCACCGCATGGGACTC
TGAGTTCCATCCCCCCTGAGGGATGACTACCCGCCAATGCTGGCGAGGTC
GAAACGGCACTCTTGGGGCTCCAGGCCCTTAAGCACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_b13.g1 MSMg01no155_b13.g1 CHROMAT_FILE:
MSMg01no155_b13.g1 PHD_FILE: MSMg01no155_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:56 2005
         (394 letters)



>mm_chr2_162534907_162535700
          Length = 794

 Score =  762 bits (394), Expect = 0.0
 Identities = 394/394 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtcctggatctagcctccagtggggacttcctgccaaggagttaaattagttgggttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtcctggatctagcctccagtggggacttcctgccaaggagttaaattagttgggttt 260

                                                                       
Query: 61  tcatgcatatataatgaacccaaagcaataaataaggctttatgggtggcagatttatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatgcatatataatgaacccaaagcaataaataaggctttatgggtggcagatttatcc 320

                                                                       
Query: 121 atttttatggtgcaaaagtaaaattcgctgagtgtttacgtcagacaggagctgcccctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttttatggtgcaaaagtaaaattcgctgagtgtttacgtcagacaggagctgcccctc 380

                                                                       
Query: 181 acccccacaggtataaatcacagtggcctgggatggtggcatggaggatcaggggcctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acccccacaggtataaatcacagtggcctgggatggtggcatggaggatcaggggcctgg 440

                                                                       
Query: 241 cttataagactgtcaataattacagccttggaaagctcacatgactcacaggcagaatct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttataagactgtcaataattacagccttggaaagctcacatgactcacaggcagaatct 500

                                                                       
Query: 301 actaggagcataggtggaaaaacaatttactaggcacacctcagctactgctaaacccat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actaggagcataggtggaaaaacaatttactaggcacacctcagctactgctaaacccat 560

                                             
Query: 361 aaagatgttgtttcaaaggattagtgtgctcacc 394
           ||||||||||||||||||||||||||||||||||
Sbjct: 561 aaagatgttgtttcaaaggattagtgtgctcacc 594


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)