AAATTTGCGGCGCTAAACGACTCCTATATCCAGAAATCCGCGGAATTCCA
CAACAATACCCGTATACCATTTTCCCTCTGATAATGCACACTTTGCTTAA
ATATTTTTCAATTTATTTAATAACCTGTATTAATATCACCTTTTATTTTC
ATATCCGTTTATCTAATTTACTTTATATATTTTTCTTCTTTTCAAATGTT
GTATATATTGGTTTATTATAAAATGTTCTATAATTTACTTAAATTTAATA
TAAATGCATGTAATTCCTTAAGTCAATATTTTCAAGATTGTAATGGAGCT
ATAAATTCCCTATAACCTACTAATAATATCCATAAAGAGGTTGTAGACTC
AGGAAAGCAAAAATATTGTATGCCAGTATGGAAGTAGAAGGCATATTACA
CATAATTAGGAATACATGGCATTCAAATGATAAAGTGAATGGGTTTATCC
TGCTTTGTAGTTATAGCATGTTAATGAGGACTATAGGAGTCTGCAGTGTT
ACACCAAAAGACTTATCCATGTGATTGTGATTGTGTGTACCCATTGATGG
TTGAGGTGACTGGCTGTGTCACTGTGTTAGTGCAACTCCATGTTGCTGAT
AACAAAAACATAATTATCTCATGATGCATTTGTTACAATCACATCTCCAT
TATTATATACTCTCCTGTGCAAGCAAACTTTCTGAGAACCAATCATATTT
CTCAAATAACGAGAAAGTGGACATGATTTACCTCTGT

AATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTAGGCTTCTTGTATGTCCATGGAATC
TCTTTCTTTAGGTTGGGGAAGTTTTCTTCTATAATTTTGCTGAAAATATT
CACTGTCCCTTTAAGTTGGAAATCTTCTTCCTCATCTATACATATTATCC
TTAGGTTGGGGCTCTCAGTGTGCGGGATTTCGGGAAGTTTACGTTTTGCC
CCCCCTTCCTCCTGGAATTTCTTTTTTGGGCTTTCGCACCTTTTTTCTCT
TTAANTTTGTGTGGCGGCCAGGGTCTTTTTATTTATTTTGGCCCCCCGGA
ACTTGTTCCTTCCCCCCTTTATTTTCTTTTTTTTAGTCCATTTCCCCTCG
GCGTTTTCTCATCCCTTTTCGCGGGTGTTTTCCATCGCACCCTCCCCCTT
TTTTACTTCCTCCCCCTTTTTTTTTATCCCCCCTATCCCTTTATTTTTTT
CCCCCCCCCCGAAATCCCCCCTTCTTCCTTTCCCTTTATATTTTCCTTTT
TCTTCCCCCCCCTCTTTATCTTTTCCCCCCTCCCCCTTCTTTAAATTCTT
TCCCATTTCCCCTTTTTTTTATTTTACCCCTCTCTCCCTTCTTTTAACCC
CTCCCTTATTTCCCCCTTTTTTTTCTCCTTTTTTTTTCCCGCCCCCCCTT
ATAACCCCCCCCCCTCCTCCCCCCACCCCCCTTTACCCCCTATCTTTTTT
CGATTTTTCTCCCCT

Query= MSMg01no155_c08.b1 MSMg01no155_c08.b1 CHROMAT_FILE:
MSMg01no155_c08.b1 PHD_FILE: MSMg01no155_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:59 2005
         (569 letters)



>mm_chr2_39877307_39878275
          Length = 969

 Score =  986 bits (510), Expect = 0.0
 Identities = 540/550 (98%), Gaps = 1/550 (0%)
 Strand = Plus / Minus

                                                                       
Query: 17  aacaatacccgtataccattttccctctgataatgcacactttgcttaaatatttttcaa 76
           ||||||||  ||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 969 aacaatacttgtacacca-tttccctctgataatgcacactttgcttaaatatttttcaa 911

                                                                       
Query: 77  tttatttaataacctgtattaatatcaccttttattttcatatccgtttatctaatttac 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 tttatttaataacctgtattaatatcaccttttattttcatatccgtttatctaatttac 851

                                                                       
Query: 137 tttatatatttttcttcttttcaaatgttgtatatattggtttattataaaatgttctat 196
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 850 tttatatatttttcttctttacaaatgttgtatatattggtttattataaaatgttctat 791

                                                                       
Query: 197 aatttacttaaatttaatataaatgcatgtaattccttaagtcaatattttcaagattgt 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 aatttacttaaatttaatataaatgcatgtaattccttaagtcaatattttcaagattgt 731

                                                                       
Query: 257 aatggagctataaattccctataacctactaataatatccataaagaggttgtagactca 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 aatggagctataaattccctataacctactaataatatccataaagaggttgtagactca 671

                                                                       
Query: 317 ggaaagcaaaaatattgtatgccagtatggaagtagaaggcatattacacataattagga 376
           |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 670 ggaaagcaaacatattgtatgccagtatggaagtagaaggtatattacacataattagga 611

                                                                       
Query: 377 atacatggcattcaaatgataaagtgaatgggtttatcctgctttgtagttatagcatgt 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 atacatggcattcaaatgataaagtgaatgggtttatcctgctttgtagttatagcatgt 551

                                                                       
Query: 437 taatgaggactataggagtctgcagtgttacaccaaaagacttatccatgtgattgtgat 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 taatgaggactataggagtctgcagtgttacaccaaaagacttatccatgtgattgtgat 491

                                                                       
Query: 497 tgtgtgtacccattgatggttgaggtgactggctgtgtcactgtgttagtgcaactccat 556
           ||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||
Sbjct: 490 tgtgtgtacccattgatggttgaagtgactggctgtgtcactatgttagtgtaactccat 431

                     
Query: 557 gttgctgata 566
           ||||||||||
Sbjct: 430 gttgctgata 421


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)