BAC Information

Click to search

BAC

Clone NameMSMg01-155D21
Chromosome2 (Build37)
Map Location 116,230,140 - 116,230,570
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043232, LOC100043236, BC052040, Mrg1, G630016G05Rik, 2810405F15Rik
Downstream geneLOC433464, Tmco5, LOC100043557, LOC241621, Spred1, LOC624574, 2610510H03Rik, Rasgrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155D21.T7 (MSMg01no155_d21.b1)MSMg01-155D21.TJ (MSMg01no155_d21.g1)
ACCAG356308AG356309
length736733
length of high quality
(start - end)
431 (83 - 513)521 (75 - 595)
definitionCHROMAT_FILE: MSMg01no155_d21.b1 PHD_FILE: MSMg01no155_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:06 2005CHROMAT_FILE: MSMg01no155_d21.g1 PHD_FILE: MSMg01no155_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGACAGTCACCCCTCTCGTTGCTCGGCTATCTTTTGTTATGTGGA
TAAGACTTTATGCTGCTCATTACTGCTTGTCATTTAGAGCTTTCTCTTAT
GAAAGCTTAAAATCTACATATGTCATAGTTGAAAACTGTATGAGTGTGAA
TCCAGAAGAAATTATTAATTGAGTTATTTTTAATCTTGACAAGCATCTCT
TAAGTATTTCTACCTCATGGCCATAATTGGGGAGGTCTTTAAAAACTGAA
GACAGGTATGAATCATTTTCCTTCAAAAGGACTGAATTTCGTGCTGTATA
AATACCACTTTAAGCTTCTTGCTAAACATGGATGCTTCTTATTTCCTTTC
CTATTTGCATCCATTATCCAGATAAAATCTACAAGATGCTTAATATATAC
CAAGTATTCAAAAGCCATATGGGTTAAAACCCTCTAAAATGAAACGCGTC
TCCAATATTTACTGTTTAACAATAACGACCACAGAGAAATTTCTCACGGG
ATCTCGTAAAATCCCTCCAGCGGCTATGAGAGGTGGAGAGAGCTTTGGAA
AGGACTGACCGCCCACCACCACTGCCTACCTTCCCGGGAAACACCTAAAC
TGATCTCTGCATTATCCAAAACCTTTCCCCGGAGTCGCCCTTGCCTCCCT
AATCCGGATACCCCGAGTTCCCTCCACGCTTCCAAT
NGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTGTTTAGCTCTGAGCCCCATTTTT
TAATGGGGTTATTTGATTTCCTGGAGTCCACCTTCTTGAGTTCTTTATAT
ATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTC
CCAATATGTTGGTGGCCTTTTTGTCTTATTGACTGTGTCTTTTGCCTTAC
AGAAGCTTTGCAGTTTCATGAGGTCCCATTTGTCAATTCTCTATCTTACA
GCACAAGCCATTGCTGTTATATTCAGGAATTTTTCCCCTGTGCCAATATC
TTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTGTCTGGTT
TTATGTGTGCTCCTCGATCCACTTAGATTTGACCTTAGTACAAGGAGATA
GGAATGGATGAATTCGCATTCTTCTACATGATAACCACCAGTTGTACCAG
CACCATTTGTTGAAAATGCTGTCTTATTTCCACTGGATGGATTTACCTCC
GTTGTCGAAAATCAATTGACCATAGGTGTGTGGGTTCATTTATGGGCCTT
CAATTCTATTCCATTGGTCTACTTGTCCTTTCCCTGTACCAGTACCATGC
CGTTTTTATCACAATTGCTCGGTATTAAAGCTTTTACTAAGGTATGGTGA
TTCCCCCCGAGGTTCTTTTATCCCTGCTAACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_d21.b1 MSMg01no155_d21.b1 CHROMAT_FILE:
MSMg01no155_d21.b1 PHD_FILE: MSMg01no155_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:06 2005
         (431 letters)



>mm_chr2_116229940_116230770
          Length = 831

 Score =  795 bits (411), Expect = 0.0
 Identities = 426/431 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatcttttgttatgtggataagactttatgctgctcattactgcttgtcatttagagctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatcttttgttatgtggataagactttatgctgctcattactgcttgtcatttagagctt 260

                                                                       
Query: 61  tctcttatgaaagcttaaaatctacatatgtcatagttgaaaactgtatgagtgtgaatc 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 tctcttatgaaagcttaaaatctacacatgtcatagttgaaaactgtatgagtgtgaatc 320

                                                                       
Query: 121 cagaagaaattattaattgagttatttttaatcttgacaagcatctcttaagtatttcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaagaaattattaattgagttatttttaatcttgacaagcatctcttaagtatttcta 380

                                                                       
Query: 181 cctcatggccataattggggaggtctttaaaaactgaagacaggtatgaatcattttcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctcatggccataattggggaggtctttaaaaactgaagacaggtatgaatcattttcct 440

                                                                       
Query: 241 tcaaaaggactgaatttcgtgctgtataaataccactttaagcttcttgctaaacatgga 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaaaaggactgaatttcatgctgtataaataccactttaagcttcttgctaaacatgga 500

                                                                       
Query: 301 tgcttcttatttcctttcctatttgcatccattatccagataaaatctacaagatgctta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcttcttatttcctttcctatttgcatccattatccagataaaatctacaagatgctta 560

                                                                       
Query: 361 atatataccaagtattcaaaagccatatgggttaaaaccctctaaaatgaaacgcgtctc 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 561 atatataccaagtattcaaaagccatatgggttaaaaccctctaaaatgaaatgtgtctc 620

                      
Query: 421 caatatttact 431
            ||||||||||
Sbjct: 621 aaatatttact 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)