BAC Information

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BAC

Clone NameMSMg01-155I13
Chromosome2 (Build37)
Map Location 87,145,219 - 87,145,679
singlet/doubletsinglet
Overlap geneLOC668424
Upstream geneOlfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429
Downstream geneOlfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155I13.T7 (MSMg01no155_i13.b1)MSMg01-155I13.TJ (MSMg01no155_i13.g1)
ACCAG356513AG356514
length740764
length of high quality
(start - end)		480 (33 - 512)317 (74 - 390)
definitionCHROMAT_FILE: MSMg01no155_i13.b1 PHD_FILE: MSMg01no155_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:27 2005CHROMAT_FILE: MSMg01no155_i13.g1 PHD_FILE: MSMg01no155_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:27 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGA
ATTCCAGGACAGCCACGGCTATACAGAGAAACCCTGCCTCTTTAATGTTC
TAGGAAAAGTATAAGTAGAACCAAAAATTAATGAATACTGTTCCATGTTT
ACACCAGTATTGATTTTAGTCTTCAAACAGGAAGGTTGTGGCAGTTTAGG
GAACAAGAGAAAACTAAAATTTTTCTATAGTTATTTTTTTACATGTGTAA
GCTGTGCTCACAGAGAAGGCTTCTTTTACTTCTGTGTACAGGAATTCAGT
TGTATATAAAATTGCACCTGCACAACAGCTGAGGGAGACTAGAAATGATG
GGTCCATACAGCTCAAACCATAGTGCAGCTACCAGCTTGTAATTTTTAGG
GACTACAAACAAGGTTCCTCTTAAAGGCGAACCAGAAACAACTTCTTATG
TTCCTTGGGCTCTGTTATATGTTGTGGAATATACGGATACTGAGAAGGTT
CAAAATTTGTTCTCCACTATTTCCTAAAGCATCATCAATTACCCAGTCTT
TTAGGACTCCATTTTGATGACCTTGTATCTCTGTCATTAACCGTTTTAGC
CCTTCAACTTCATCCTTCTCCTGTGTCAAGTTTATTATCAGGCAATTTGA
ATAAAGCTGCTCCTAGCTGTAGCCCTATCACTGTTAGTGGTGTTCATGCT
CTATCACACCCCCTTTCTTTTCTTCCCATTCCTATTATTN

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAATGTCTAAACTGCTATTAAGAAGTA
CAGAATACCCAAGGAGCTGAAGGGCTTAGCAGCCTAATAGGAGAAACAAC
AATATAAATCAACCAGTACCCTCAGAGCTCTCAGGGACTAAACCACCAAC
CAAAGAAAACACCTGGTGGGATTCATGGCTCTAGCTGCATATGTGACAGA
GAATGGCCTAGTCAGTCATCAGTGGGAGGAGAGGCCCTTGGTCCTGTGAT
GGTTTTATGCTCCAGTATAAGGGACTGACAAGTCCAGGAAGCAGGAGCGG
GTGGGTTGGTGAGCAGGGAGACGGGGCAAGGGTAGGGGGTCCCGGACTGC
CACACCCTAATCCCCCTTCCCTAATTTTTTATCCTACCCTTTTTCCCTTC
TTTTCTCCCTTTCCTCCTCCCCCCCTTCCTCCTTCTCCCCTTCATCCCTT
TTCCTCACATCGTTTATTTCCCCCTTTCTTTACCCCTTTTTTTCCCCCTT
TTTCCCCACCCTTTTCCCATATCCCATTTTCGCCTTTTTTCCTCTTTTAC
CCCCTTCCCCTTTTCCCGTTTTCTTTCGCTTTTTCCCTTTTTCCCCCCAT
CCCCATTCCCTTTCCACCTTTTTTCCTTTTTCCCCTTTTCCCCCTTTTTT
TCCCTTTCGCTTTTTTCTTTTTTCCCCCCTTTTCCATTTCCGTCCCCACT
ACCCCCCTTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_i13.b1 MSMg01no155_i13.b1 CHROMAT_FILE:
MSMg01no155_i13.b1 PHD_FILE: MSMg01no155_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:27 2005
         (480 letters)



>mm_chr2_87144961_87145840
          Length = 880

 Score =  884 bits (457), Expect = 0.0
 Identities = 460/461 (99%)
 Strand = Plus / Minus

                                                                       
Query: 17  gaattccaggacagccacggctatacagagaaaccctgcctctttaatgttctaggaaaa 76
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 gaattccaggacagccatggctatacagagaaaccctgcctctttaatgttctaggaaaa 660

                                                                       
Query: 77  gtataagtagaaccaaaaattaatgaatactgttccatgtttacaccagtattgatttta 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gtataagtagaaccaaaaattaatgaatactgttccatgtttacaccagtattgatttta 600

                                                                       
Query: 137 gtcttcaaacaggaaggttgtggcagtttagggaacaagagaaaactaaaatttttctat 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 gtcttcaaacaggaaggttgtggcagtttagggaacaagagaaaactaaaatttttctat 540

                                                                       
Query: 197 agttatttttttacatgtgtaagctgtgctcacagagaaggcttcttttacttctgtgta 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 agttatttttttacatgtgtaagctgtgctcacagagaaggcttcttttacttctgtgta 480

                                                                       
Query: 257 caggaattcagttgtatataaaattgcacctgcacaacagctgagggagactagaaatga 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 caggaattcagttgtatataaaattgcacctgcacaacagctgagggagactagaaatga 420

                                                                       
Query: 317 tgggtccatacagctcaaaccatagtgcagctaccagcttgtaatttttagggactacaa 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tgggtccatacagctcaaaccatagtgcagctaccagcttgtaatttttagggactacaa 360

                                                                       
Query: 377 acaaggttcctcttaaaggcgaaccagaaacaacttcttatgttccttgggctctgttat 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 acaaggttcctcttaaaggcgaaccagaaacaacttcttatgttccttgggctctgttat 300

                                                    
Query: 437 atgttgtggaatatacggatactgagaaggttcaaaatttg 477
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 atgttgtggaatatacggatactgagaaggttcaaaatttg 259


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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