BAC Information

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BAC

Clone NameMSMg01-155I19
Chromosome2 (Build37)
Map Location 29,049,223 - 29,110,719
singlet/doubletdoublet
Overlap geneNtng2
Upstream geneOlfm1, Gm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5, Gfi1b, Tsc1, 1700026L06Rik, 1190002A17Rik, LOC665643, Gtf3c4, Ddx31, Barhl1, LOC100033452, 1700101E01Rik, LOC100039666, Ttf1, Setx
Downstream geneCrsp8, Rapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155I19.T7 (MSMg01no155_i19.b1)MSMg01-155I19.TJ (MSMg01no155_i19.g1)
ACCAG356525AG356526
length731734
length of high quality
(start - end)		603 (45 - 647)474 (76 - 549)
definitionCHROMAT_FILE: MSMg01no155_i19.b1 PHD_FILE: MSMg01no155_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:29 2005CHROMAT_FILE: MSMg01no155_i19.g1 PHD_FILE: MSMg01no155_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,110,120 - 29,110,719)(29,049,223 - 29,049,696)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTCAGTTCACCATGGAAAAGCAGGGGCTGCACTCCCAGATAAATC
CCCTTTTCACACTGACGGGGAAACTGAGGCTAAGAGCAAGAAAAGTTCTC
CTCAAATGCACAGGGCTAGTTAGGTGAGGGGCCAAGAAAGCCCAGTCTCT
CTCCCGTGCTGTGATTGTCGCGGCAGCATCTTTGCATGCGTGGGTCACAA
GAGCCATCCTGAAACTCAGTAGAGCCAGCCCAGGGTCCCGGGTCATCTGA
ACTGGAAGTTAAAAGCATCCTTCTCCATGCCTTGTTGAAGGCATCCAGAC
ACTGTATGATGTAACAGCAGGGCACTGCTGGGGATTGATGGCCCTGCCTG
GGGGAGACAGCAGGCCAAAGGCCTACAGGGTCATCACTCACCCTGGGCAG
AAGCCCCACAGTGTGCCCTTCACTGTTGCCTGAGGCACAAATGCTTACAA
TCTGAGAGGCTGTGGTCTGCCTGCTTCCTCCAAGGAGTTCCCTCTGGTTG
GAGACACTGAGGCCAGGATAGGAATATGTGTGTATTAGGGGAGAGGACAT
TGGTCTGCATCTGCTTTCCTGGACAGCTTGGTGGGGTGGCCCTTCTTTGA
AATTTGAGGATGTGTTCAAGTTGCCCCTCAGAAAAGAATCGCTTGTCAGT
CACACTCGACAGATAGGTATACTGATGCTCT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAAGAATTCTCCCTGAGTTATTTTC
CTGGGGCTTCCACAGCAGAGACTCTGGATTTGGGGGAGTTGCAGGAAAGG
GGTGGGGCACCCCTGTTTGGAGATCCACCTACCAGATGGTGGCCAGCAGC
CTGGCTGACGGTAAAATTGGGGGAGCATACAAGGAAAGAACAGACTGGGA
AGAGTGGCCCCAATACCGAGTCTTTAAACCTTTTCTGTGGTCTCCTTTCT
TTATCCAAACCTTTGGAGTGTCTGTCAACACAGGAAGCAAGCAGGCAGAG
GCAGCTGTGAAGTCGCTTTACTGTGGGCTTGTACACCATCAGCCACCCTC
AGTGACCACCTCCCACCCGAGTCCGTCCTCACAAGGGACAGTGGATACAA
ACAAAATAGTTCTCTAGAAAACAAGGTTTCCACCCCTCCCCGCCCTTTGT
CCTATCCCTCCCGCAGACAGTGAGTTCTTCTCTCTCCAGGCCTCCTTGGT
GACCTGGGGTCTGGTGAGCGTTTAACACTTTTTCCTCATCCCCTTTACCC
TTGAGAATCCCGTTTGCGACTAGAGTTGTAGGCCACTGCTGTTCCGGTTC
TGCTGTTTCGCGTTGGCCTCTTTACCTTTCCCTTTTCCGTGCTTCCCACC
CTTTGCGTTGTGCTCGCCTGTGCCTCCATTTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_i19.b1 MSMg01no155_i19.b1 CHROMAT_FILE:
MSMg01no155_i19.b1 PHD_FILE: MSMg01no155_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:29 2005
         (603 letters)



>mm_chr2_29109751_29110753
          Length = 1003

 Score = 1129 bits (584), Expect = 0.0
 Identities = 596/600 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagtcagttcaccatggaaaagcaggggctgcactcccagataaatcccctttt 63
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 969 ggaattcagtcagttcaggatggaaaagcaggggctgcactcccagataaatcccctttt 910

                                                                       
Query: 64  cacactgacggggaaactgaggctaagagcaagaaaagttctcctcaaatgcacagggct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 909 cacactgacggggaaactgaggctaagagcaagaaaagttctcctcaaatgcacacggct 850

                                                                       
Query: 124 agttaggtgaggggccaagaaagcccagtctctctcccgtgctgtgattgtcgcggcagc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 agttaggtgaggggccaagaaagcccagtctctctcccgtgctgtgattgtcgcggcagc 790

                                                                       
Query: 184 atctttgcatgcgtgggtcacaagagccatcctgaaactcagtagagccagcccagggtc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 atctttgcatgcgtgggtcacaagagccatcctgaaactcagtagagccagcccagggtc 730

                                                                       
Query: 244 ccgggtcatctgaactggaagttaaaagcatccttctccatgccttgttgaaggcatcca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ccgggtcatctgaactggaagttaaaagcatccttctccatgccttgttgaaggcatcca 670

                                                                       
Query: 304 gacactgtatgatgtaacagcagggcactgctggggattgatggccctgcctgggggaga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gacactgtatgatgtaacagcagggcactgctggggattgatggccctgcctgggggaga 610

                                                                       
Query: 364 cagcaggccaaaggcctacagggtcatcactcaccctgggcagaagccccacagtgtgcc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 cagcaggccaaaggcctacagggtcatcactcaccctgggcagaagccccacagtgtgcc 550

                                                                       
Query: 424 cttcactgttgcctgaggcacaaatgcttacaatctgagaggctgtggtctgcctgcttc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 cttcactgttgcctgaggcacaaatgcttacaatctgagaggctgtggtctgcctgcttc 490

                                                                       
Query: 484 ctccaaggagttccctctggttggagacactgaggccaggataggaatatgtgtgtatta 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ctccaaggagttccctctggttggagacactgaggccaggataggaatatgtgtgtatta 430

                                                                       
Query: 544 ggggagaggacattggtctgcatctgctttcctggacagcttggtggggtggcccttctt 603
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ggggagaggacattggcctgcatctgctttcctggacagcttggtggggtggcccttctt 370


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no155_i19.g1 MSMg01no155_i19.g1 CHROMAT_FILE:
MSMg01no155_i19.g1 PHD_FILE: MSMg01no155_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:29 2005
         (474 letters)



>mm_chr2_29049023_29049896
          Length = 874

 Score =  878 bits (454), Expect = 0.0
 Identities = 469/474 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagaattctccctgagttattttcctggggcttccacagcagagactctggatttgggg 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagaattctccctcagttattttcctggggcttccacagcagagactctggatttgggg 260

                                                                       
Query: 61  gagttgcaggaaaggggtggggcacccctgtttggagatccacctaccagatggtggcca 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagttgtaggaaaggggtggggcacccctgtttggagatccacctaccagatggtggcca 320

                                                                       
Query: 121 gcagcctggctgacggtaaaattgggggagcatacaaggaaagaacagactgggaagagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagcctggctgacggtaaaattgggggagcatacaaggaaagaacagactgggaagagt 380

                                                                       
Query: 181 ggccccaataccgagtctttaaaccttttctgtggtctcctttctttatccaaacctttg 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 ggccccaataccgagtctttaaaccttttttgtggtctcctttctttatccaaacctttg 440

                                                                       
Query: 241 gagtgtctgtcaacacaggaagcaagcaggcagaggcagctgtgaagtcgctttactgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagtgtctgtcaacacaggaagcaagcaggcagaggcagctgtgaagtcgctttactgtg 500

                                                                       
Query: 301 ggcttgtacaccatcagccaccctcagtgaccacctcccacccgagtccgtcctcacaag 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 ggcttgtacaccatcagccaccctcagtgaccacctcccacccgagtctgtcctcacaag 560

                                                                       
Query: 361 ggacagtggatacaaacaaaatagttctctagaaaacaaggtttccacccctccccgccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggacagtggatacaaacaaaatagttctctagaaaacaaggtttccacccctccccgccc 620

                                                                 
Query: 421 tttgtcctatccctcccgcagacagtgagttcttctctctccaggcctccttgg 474
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttgtcctacccctcccgcagacagtgagttcttctctctccaggcctccttgg 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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