BAC Information

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BAC

Clone NameMSMg01-155K19
Chromosome2 (Build37)
Map Location 109,692,995 - 109,818,415
singlet/doubletdoublet
Overlap geneLin7c, Lgr4
Upstream geneLOC100043423, LOC623031, Mett5d1, Kif18a, Bdnf, LOC100043427
Downstream geneCcdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12, Muc15, LOC668802
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155K19.T7 (MSMg01no155_k19.b1)MSMg01-155K19.TJ (MSMg01no155_k19.g1)
ACCAG356620AG356621
length746746
length of high quality
(start - end)		661 (43 - 703)411 (73 - 483)
definitionCHROMAT_FILE: MSMg01no155_k19.b1 PHD_FILE: MSMg01no155_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:37 2005CHROMAT_FILE: MSMg01no155_k19.g1 PHD_FILE: MSMg01no155_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,692,995 - 109,693,652)(109,818,008 - 109,818,415)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTAAACCTGACTCTCTTCTGAGTTCTAGATAGGCACATGACAAACATC
TCCACTGGAAATACTCAATATATAAGTGCGTATGTCATTTAAGCCCTGTA
TTTTACCAAAATTTTATTCAAGCTCTGTAAATGTGCTACATTTATGATTA
TTTCTGTAATTCCGTCCAAGGAATAAGTCATGGCAGTTTAAGCTGCAAGA
AGACCAATCTATAAAGGACAAGAACAATTTGCATCTAAAATTTTGGCTGA
TACTACAGTTGACCCTTCCTTACAGAATCCAGAGCCAAATTCCCAATTAA
TAATCGAAAAGTGAAACCTGATGTTTGCAAAATATCTTGTTTAGTGCTCT
AAGTACACCATATATAACATTTTCAACACTCATAAATCCCTCAATTCACA
GCAGGGAAAACTAAATGCATAACATTTATTTATATGGTTAGTTTTATAAA
TTAATAAGCATATAATCCATGCCCCCTTCTTCTGATTCTCCATCTCCTCC
ACCCAGTGATAAATGAGCAAGAATATTCTAGGAGATAGAAGTGACCAAGG
TTTAGAAGGCCTCAATCTCTTTCCCCTGATTCCTGGAAATGGCCAATATG
TCCCTATCACCACTGTTTCTGTATAGGGTGCACTTGCACAGTGTATAACA
CCTTTCAGCTGGCTCTCTTGGAGTATTTCAGATTGACTTGCGTTAT

ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCCAGTTTGATTCTTCTAGCTTGCTATT
AAATTCTGATTTATTAAATCCCAAGCCAGACTACATCACATTTTCATCAT
CTATATTCACGAGCTACTAAGCACTTACAACGAAGTTACAGATATAGTTT
AGTAGAACTCAGTAAATTGATATTAACTCCTATTTAAATGAAGAATTCTT
CAACAATATTTTGTTGATTTCAGATTGATCCATTTCATGCAGTTGTGGCT
AGAAGCTGCATTTTAGTAGGTTGATCTAGCCATGGTTTCTCTCTGCCCAG
TGTATATCTACCTTCCTGTTTTCTTCTGCTAACTTTGGGGAACCATTTCT
CCAGTCCAAATAGTGCTATTAGGTAGGGATGGATTGATGAACCAAGTTAG
ACAACACTATCCAACAGAATAGATATTTTACGAACAAGCACGGGAGGCAA
GACTGCCAAGCATAGTCCTCCCAGGTCTCTGCTCAAAGCAACAAGGATTA
CTTTAGACATTCATTTACGATTCTAGGACTGCTGCATGTTTGAGTCCCCA
CCATATGAAGACCGAACTTATTATAGGAAAGGAACCAAAGACAGAGAAGT
AGGAATCTTAACCGATTACCCGAGACCCTGTGGAAACTCTTGCATTTTAC
ACCTTTAGCACCTTTGGCATTTGAAGCCACTCCGCCTCCTGGTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_k19.b1 MSMg01no155_k19.b1 CHROMAT_FILE:
MSMg01no155_k19.b1 PHD_FILE: MSMg01no155_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:37 2005
         (661 letters)



>mm_chr2_109692792_109693852
          Length = 1061

 Score = 1226 bits (634), Expect = 0.0
 Identities = 652/658 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttaaacctgactctcttctgagttctagataggcacatgacaaacatctccac 63
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttaaacctgactatcttctgagttctagataggcacatgacaaacatctccac 263

                                                                       
Query: 64  tggaaatactcaatatataagtgcgtatgtcatttaagccctgtattttaccaaaatttt 123
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 264 tggaaatactcaatatataagtgtgtatgtcatttaagccctgtattttaccaaaatttt 323

                                                                       
Query: 124 attcaagctctgtaaatgtgctacatttatgattatttctgtaattccgtccaaggaata 183
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 324 attcaagctctgtaaatgtgctacatttatgattatttctgtaattccatccaaggaata 383

                                                                       
Query: 184 agtcatggcagtttaagctgcaagaagaccaatctataaaggacaagaacaatttgcatc 243
           || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 384 agccatggcagtttaagctgcaagaagaccaatctataaaagacaagaacaatttgcatc 443

                                                                       
Query: 244 taaaattttggctgatactacagttgacccttccttacagaatccagagccaaattccca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taaaattttggctgatactacagttgacccttccttacagaatccagagccaaattccca 503

                                                                       
Query: 304 attaataatcgaaaagtgaaacctgatgtttgcaaaatatcttgtttagtgctctaagta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 attaataatcgaaaagtgaaacctgatgtttgcaaaatatcttgtttagtgctctaagta 563

                                                                       
Query: 364 caccatatataacattttcaacactcataaatccctcaattcacagcagggaaaactaaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 caccatatataacattttcaacactcataaatccctcaattcacagcagggaaaactaaa 623

                                                                       
Query: 424 tgcataacatttatttatatggttagttttataaattaataagcatataatccatgcccc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgcataacatttatttatatggttagttttataaattaataagcatataatccatgcccc 683

                                                                       
Query: 484 cttcttctgattctccatctcctccacccagtgataaatgagcaagaatattctaggaga 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cttcttctgattctccatctcctccacccagtgataaatgagcaagaatattctaggaga 743

                                                                       
Query: 544 tagaagtgaccaaggtttagaaggcctcaatctctttcccctgattcctggaaatggcca 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tagaagtgaccaaggtttagaaggcctcaatctctttcccctgattcctggaaatggcca 803

                                                                     
Query: 604 atatgtccctatcaccactgtttctgtatagggtgcacttgcacagtgtataacacct 661
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 atatgtccctaacaccactgtttctgtatagggtgcacttgcacagtgtataacacct 861


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no155_k19.g1 MSMg01no155_k19.g1 CHROMAT_FILE:
MSMg01no155_k19.g1 PHD_FILE: MSMg01no155_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:37 2005
         (411 letters)



>mm_chr2_109817808_109818618
          Length = 811

 Score =  750 bits (388), Expect = 0.0
 Identities = 403/408 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccagtttgattcttctagcttgctattaaattctgatttattaaatcccaagccagact 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 608 cccagtttgattcttctagcttgctattaaattctgatttactaaatcccaagccagact 549

                                                                       
Query: 61  acatcacattttcatcatctatattcacgagctactaagcacttacaacgaagttacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 acatcacattttcatcatctatattcacgagctactaagcacttacaacgaagttacaga 489

                                                                       
Query: 121 tatagtttagtagaactcagtaaattgatattaactcctatttaaatgaagaattcttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tatagtttagtagaactcagtaaattgatattaactcctatttaaatgaagaattcttca 429

                                                                       
Query: 181 acaatattttgttgatttcagattgatccatttcatgcagttgtggctagaagctgcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 acaatattttgttgatttcagattgatccatttcatgcagttgtggctagaagctgcatt 369

                                                                       
Query: 241 ttagtaggttgatctagccatggtttctctctgcccagtgtatatctaccttcctgtttt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 368 ttagtaggttgatctagccatggtttctctctgcccagtgtatatctaccttcctgcttt 309

                                                                       
Query: 301 cttctgctaactttggggaaccatttctccagtccaaatagtgctattaggtagggatgg 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 308 cttctgctaactttggggaaccatttctccagtccaaatagttctattaggaagggatgg 249

                                                           
Query: 361 attgatgaaccaagttagacaacactatccaacagaatagatatttta 408
           ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 248 attgatgaaccaagttagacaacactatcaaacagaatagatatttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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