BAC Information

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BAC

Clone NameMSMg01-155L24
Chromosome2 (Build37)
Map Location 101,274,046 - 101,274,259
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC241572, LOC668705
Downstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik, LOC100043302, Commd9, Ldlrad3, LOC674202, Trim44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155L24.T7 (MSMg01no155_l24.b1)MSMg01-155L24.TJ (MSMg01no155_l24.g1)
ACCAG356676AG356677
length725747
length of high quality
(start - end)
214 (142 - 355)245 (154 - 398)
definitionCHROMAT_FILE: MSMg01no155_l24.b1 PHD_FILE: MSMg01no155_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:43 2005CHROMAT_FILE: MSMg01no155_l24.g1 PHD_FILE: MSMg01no155_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTATGCTTGCTGCTTCTTGTGATTGACAATATGTGGTTAGGGTAG
ATTAGACCCTGGCATGCCTCCACTGCCTATGGTCCCCTACAAGGACACTA
TTGAATAGAGGGGCTTCTGTTGGGGAGAATTGGCAAGGACTCACTCCATC
AATACTGTCTTTTCCTTTTGTTCTTCCTCAGGGCCTCTCACTCAGCACTC
ATCCATCTGGCCAGTATGAGTCAAGTTCCAAAGCACTTTGTCCCTCAGTG
TGGACATAGGAGTTTTCAAATGTTCTCAGGAAACATGAGAAAGCACTCTG
ATCTTCTTTTTTTTTATATCTTCAAGTTCTTAACCTCTGCTTGATCTAGG
CATGATCAAGGAACCCATATAAATTACCTTGCTGGCACAACATCAGTATA
AAATATTATACTGGGAAAATCAAATTTCAGTCATGATGAAATATTTACTA
AGCAAGTACGCCTAACTAAATGTTTTAATTCTCAAATGCAAATGGTAACA
ATTACCCCGGATTCCTCCTCCTTAACAGACCGATCTAAATATCCAACGGA
AATCTTATTGCAACGCATTTTTTTGACTTGCAAACACACCTAAAACCTAA
GTGAATATTCAAAGCATTATCATTTCCTACTCTACCCCAATTTATCCCTA
ACAATGACAGTACAATGTTTTTTAA
NCGATTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGGTTAGCTCTGTAACCGATTAC
CACAGCAACACAAGCACTGACTGACTGACTGACTGAATGACTGACTGACG
CACAATATATATATTTGCGTTTTTCAAGACAGGGTTTCTCTGTATAGCCC
TGGCTGTTCTGGAACTCACTCTGTACCTGGCCTTGAACTCAGAAATTTGC
CTGTCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGGGTCACCATGCCC
AGCTAGCCCATTTTTAAATAGGATTATTTGATTTTCTGGAGTCCATCTTC
TTGAGTTCTTTATATATATTGGATATTGCCACAGTCTCCGCTTTGCAGAG
ACAAGAACGACACAGACGCCAAGACAGGTTCACACAGCTTCCGTAGCTTT
TTACTTACAGCTTTTTCACTTACAGCTCTTTTTACTTACGGCAAGGGCTA
TATTTATACAGTAGTGGCAACTGACCTCATCTCGCTCCACACCTCCTCAT
CCAATTCATAATCACATATGCTCCAGGCACGAGCTCAAGTTGGTCACAGA
CAGGCTGACAGATTTGGATTCCGAGCAACACCCTAACTTGCCATGTATCC
TTATGCTTGCTGTATTCCTTGCATATTGTTAGGGCCAAGGACTAAAACAT
GTCGTGTATTCACAGGGCCCTGTTCTCTGTTCTCATAGATTCCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_l24.b1 MSMg01no155_l24.b1 CHROMAT_FILE:
MSMg01no155_l24.b1 PHD_FILE: MSMg01no155_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:43 2005
         (214 letters)



>mm_chr2_101273846_101274459
          Length = 614

 Score =  377 bits (195), Expect = e-109
 Identities = 210/215 (97%), Gaps = 2/215 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggacactattgaatagaggggcttctgttggggagaattggcaaggactcactccatca 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 aggacactattgaatagaggggcttctgttggggagaatcggcaaggactcactccatca 260

                                                                       
Query: 61  atactgtcttttccttttgt-tcttcctcagggcctctcactcagcactcatccatctgg 119
           |||||||||||||||||| | |||||||| |||||||||||||| |||||||||||||||
Sbjct: 261 atactgtcttttcctttt-tctcttcctcggggcctctcactcaacactcatccatctgg 319

                                                                       
Query: 120 ccagtatgagtcaagttccaaagcactttgtccctcagtgtggacataggagttttcaaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccagtatgagtcaagttccaaagcactttgtccctcagtgtggacataggagttttcaaa 379

                                              
Query: 180 tgttctcaggaaacatgagaaagcactctgatctt 214
           |||||||||||||||||||||||||||||||||||
Sbjct: 380 tgttctcaggaaacatgagaaagcactctgatctt 414


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space:   124025
Effective search space used:   124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)