BAC Information

Click to search

BAC

Clone NameMSMg01-155M08
Chromosome2 (Build37)
Map Location 107,653,622 - 107,653,941
singlet/doubletsinglet
Overlap genenone
Upstream geneC130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb, Kcna4
Downstream geneLOC100043078, LOC668790, LOC623003
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155M08.T7 (MSMg01no155_m08.b1)MSMg01-155M08.TJ (MSMg01no155_m08.g1)
ACCAG356691AG356692
length752769
length of high quality
(start - end)
324 (46 - 369)206 (77 - 282)
definitionCHROMAT_FILE: MSMg01no155_m08.b1 PHD_FILE: MSMg01no155_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:45 2005CHROMAT_FILE: MSMg01no155_m08.g1 PHD_FILE: MSMg01no155_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTACAGTACCACAAGCTTTGGGAGTAAAACCTTAATAGACAATG
ACAGGAGTCTTAGAGAAAAAACAGGGTTTGCTCATAACCCAGTGAAAATT
AATAATCTGTCACTGTTGCCCAATTCCTCACTATGAACAAAGCTTTGGTG
TTAGGCTCATTGAGGAGAAAAGAGCCATAAAGATCTGTTCTTCAAGCTAT
TTCTGAAAAATCTAAACATGATTGAAGCACGGTTAGCTTAATTCTTGAAA
TGAAGACTTTTGGACTTTTATGATAGTTTTTTTTTCTTTTCTTCTTTTTC
ACTTAATGATCTGTCAAGGTAAAATGCATATTACATTAATCAGGAGTCTG
TTCGTATAATATATTCTCACCACGCTCTCTTCTCATTCATATTGACAATG
AGAAAAACATAAGGATTCATATATTATGTCCGAATTCACCGAAACACATA
AGTTATTGACTATGCCATATTACTTCCTCTATATTTGCACATACCCTATT
ATATGTCCTTAGCAGACGCATCTGTATTATCCACCTTCTTTTCCGTCCAT
CCCCTTTGCCCAATTTCCTTTCCCCTATTTACCCCTTTATCCCTCTAACA
TCCCCCCTCCCCTTCTTTTATTTCTTTTTCCCCCTTCCTTCTTTCCTCCT
TTTTTTTTCTCCTTTTACTTCTACCCTACTCCCTCATTTTATCCCCCCCC
TG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACCCCCCTTATCTCATTTAGAAT
GACTACTATCCAAAAAGAGGACAAGCAAAGGCTGCAAAGGAGCTAGGAGA
AGAGGAAGTCTTATATATTGTTGGTCGATGTAACTCAGTAAAGCAGTGTG
CAAAATGCGATGACGTGATCTTCCTCATCCGAAAACAGCACTGGCATGTG
ATCCAGCCATCCCACTCCTAGGCGCATATACAAAGAAAGCGAAGTCAGAA
TATAGAAGAAATGTATGCATCCCCACATTGTTGACTGTAGCCGTGCCACT
TACAGCTAATACTGTTTTCCATTCTAGGTGTCCAACCATAGACAATCATA
AATTTCCTCAATGCACCACCCCTGCCCCATAAACCCGCCTGACCCACCTT
TTGACTTACCCTCCCCCACTCTATGTCTTTCCTATATGTTAGCCCCGATT
ACCTTTCTTGTCCCCCCCCCTATCCCCCTGAACTATTCCACTGTACTACC
CGTTCATCCCCCCCTATTTTTCTTTCTCATCATCCCCTTCTTTTTTTCTT
TCCCGTTTCCCTTCCTTTTTTTTACCCCCCTTTCCCTTTCTTATCCCCCT
CCCCTTTTCTCCCTTTTTTTTCCACTTCTCTTTTCCCCCCCCCCCCTTTT
TTTCCCCTATCCCCTCCTCCCCACCCCCCCTTTTTCCCCTCTTCCCTTTT
CCCCATTATTTATCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_m08.b1 MSMg01no155_m08.b1 CHROMAT_FILE:
MSMg01no155_m08.b1 PHD_FILE: MSMg01no155_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:45 2005
         (324 letters)



>mm_chr2_107653419_107654141
          Length = 723

 Score =  561 bits (290), Expect = e-164
 Identities = 314/322 (97%), Gaps = 3/322 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgtacagtaccacaagctttgggagtaaaaccttaatagacaatgacaggagt 63
           |||| ||||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaaatctgtacaggagca-aagctttgggagtaaaaccttaatagacaatgacaggagt 262

                                                                       
Query: 64  cttagagaaaaaacagggtttgctcataacccagtgaaaattaataatctgtcactgttg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cttagagaaaaaacagggtttgctcataacccagtgaaaattaataatctgtcactgttg 322

                                                                       
Query: 124 cccaattcctcactatgaacaaagctttggtgttaggctcattgaggagaaaagagccat 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 323 cccaattcctcactatgaacaaagctttggtgttaggctcattgaggagaaaggagccat 382

                                                                       
Query: 184 aaagatctgttcttcaagctatttctgaaaaatctaaacatgattgaagcacggttagct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaagatctgttcttcaagctatttctgaaaaatctaaacatgattgaagcacggttagct 442

                                                                       
Query: 244 taattcttgaaatgaagacttttggacttttatgatagtttttttttcttttctt-cttt 302
           |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct: 443 taattcttgaaatgaagacttttgaacttttatgatagtttttttttcttt-ctttcttt 501

                                 
Query: 303 ttcacttaatgatctgtcaagg 324
           ||||||||||||||||||||||
Sbjct: 502 ttcacttaatgatctgtcaagg 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 723
Length adjustment: 9
Effective length of query: 315
Effective length of database: 714
Effective search space:   224910
Effective search space used:   224910
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)