BAC Information

Click to search

BAC

Clone NameMSMg01-155M09
Chromosome2 (Build37)
Map Location 147,625,018 - 147,779,288
singlet/doubletdoublet
Overlap genenone
Upstream geneGm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1, LOC640914, A530006G24Rik
Downstream geneLOC100043820, Foxa2, LOC383752, Sstr4, Thbd, Cd93, Nxt1, Gzf1, Napb, Cstl1, Cst11, 8030411F24Rik, Cst12, Cst8, Cst13, Cst9, 9230104L09Rik, Cst3, OTTMUSG00000015744
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155M09.T7 (MSMg01no155_m09.b1)MSMg01-155M09.TJ (MSMg01no155_m09.g1)
ACCAG356693AG356694
length748769
length of high quality
(start - end)
481 (44 - 524)213 (74 - 286)
definitionCHROMAT_FILE: MSMg01no155_m09.b1 PHD_FILE: MSMg01no155_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:45 2005CHROMAT_FILE: MSMg01no155_m09.g1 PHD_FILE: MSMg01no155_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,625,018 - 147,625,494)(147,779,076 - 147,779,288)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTCTAAATTATCAATAAATATCTAATGAGGTAATGCTGAATACATAT
GTGAATGAACATGTGAAGGGTGCATTATGTGTGTATATATCTAATTTGTA
AGGCTGAGTGAACTCTTTGTGTCTTACCCTGTACCACAGTGTAGAGGGGG
TAGAGCCTCTCTAATTGTAGAGTACAAATCATGTTTGGCTGATGCTGTGT
AACACCCAGCATAGACACTATCTAGTCGGTCTTAAGGACGTTTCTCACTC
TGCATATGAACTAGTAAATTTATGTGGCTTACACTTGGCTGGGAATATCT
CCAACAAGGCTGCAGTAAATGTGCTGAAGTGTCAATGGAGACAATCTGAG
TAAGGTAAGCTCACTAGGGTATGATTCAGAAGTGAGCAACATGGCAGGGA
AACAGGGTTTATGTGAGTTGTTCTCAATCTTCCTAATACCGTGACCCTTT
AATGCAGTTCTTCATAAAATGGTGACCCCCACAACCATAAAAGCTATTTC
ATTGCTACTTCTTATCTGTAATTTTACTCCTGATATGAATATTAATGTAA
CCACCTGATATGAACGATATTTGATGCGCGACCCTTTATTATTCCTGCAT
CTGCTCTCTGATCCATATTGTTCTCTCGCGCTCTCCGTATTCTGCTTTTG
GCCCTTTCTTGCAACCTCATTTCTGCGTTTTACTCATCCGCTACTTTT
TTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATCTGTGAGTGTGTCTGGTCCTGGGGT
TGTCTTTGTGCTCACAGATCTGAGGTTGATAATGCGCACTGATGATGATT
CCTTTGCTTTACATCCGTTGTACTTGTTTTTATCCTCTGGGCTGAATTTT
GGGAGCTTAAAACTGTTTGCGCCAGGCATGGTGGCGCAGGCCTTTAATCC
CAGCACGTGGGAGGCAGAGGCAGGCGGATTTCTGAGCTCGAGGTCAGCCT
GGCCGACAGAGTGAGTTCCAGGACAGCCAAGGCTACACAGAGAAATCCTG
TCTCGAAAAACAAAACACAAACCAAACAAACAAAAACCTGTTTGCAGGTA
ACACCACTGAGAACTCCTTTATAGCTTCTCGTTATAGCTCCCCCTGTCAG
ATTTGTGTCCAGTGCCCAATGCCTCACATTAGTTGACTCTGGGTCCGTTT
CAACCCTCTATTTTCCTCATCCTCTCCCTTTCTTTCCCCTTTTGCCCCCC
CCTTTCCCGTATCCCATTTACCTCTTTTATCCTCTTTTTTCTTCTTCCAC
CTTTTCACATTTTTTTTCTCTTTTTCCCTATTTTTTCGCCTTTCCGCTTA
CCCATTCCGCGCTTTTTCCCTTTTTCCCCTTTCCACCCTTTTATTCCCTT
TCCCTTTTTTCCCTTTTATTCCCTCCCTTTTTCCTTTATCCTTTCCCACC
TTACCTCCCTTTTTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_m09.b1 MSMg01no155_m09.b1 CHROMAT_FILE:
MSMg01no155_m09.b1 PHD_FILE: MSMg01no155_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:45 2005
         (481 letters)



>mm_chr2_147624814_147625694
          Length = 881

 Score =  915 bits (473), Expect = 0.0
 Identities = 476/477 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttctaaattatcaataaatatctaatgaggtaatgctgaatacatatgtgaatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttctaaattatcaataaatatctaatgaggtaatgctgaatacatatgtgaatg 264

                                                                       
Query: 65  aacatgtgaagggtgcattatgtgtgtatatatctaatttgtaaggctgagtgaactctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacatgtgaagggtgcattatgtgtgtatatatctaatttgtaaggctgagtgaactctt 324

                                                                       
Query: 125 tgtgtcttaccctgtaccacagtgtagagggggtagagcctctctaattgtagagtacaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtgtcttaccctgtaccacagtgtagagggggtagagcctctctaattgtagagtacaa 384

                                                                       
Query: 185 atcatgtttggctgatgctgtgtaacacccagcatagacactatctagtcggtcttaagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atcatgtttggctgatgctgtgtaacacccagcatagacactatctagtcggtcttaagg 444

                                                                       
Query: 245 acgtttctcactctgcatatgaactagtaaatttatgtggcttacacttggctgggaata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acgtttctcactctgcatatgaactagtaaatttatgtggcttacacttggctgggaata 504

                                                                       
Query: 305 tctccaacaaggctgcagtaaatgtgctgaagtgtcaatggagacaatctgagtaaggta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctccaacaaggctgcagtaaatgtgctgaagtgtcaatggagacaatctgagtaaggta 564

                                                                       
Query: 365 agctcactagggtatgattcagaagtgagcaacatggcagggaaacagggtttatgtgag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agctcactagggtatgattcagaagtgagcaacatggcagggaaacagggtttatgtgag 624

                                                                    
Query: 425 ttgttctcaatcttcctaataccgtgaccctttaatgcagttcttcataaaatggtg 481
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttgttctcaaccttcctaataccgtgaccctttaatgcagttcttcataaaatggtg 681


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no155_m09.g1 MSMg01no155_m09.g1 CHROMAT_FILE:
MSMg01no155_m09.g1 PHD_FILE: MSMg01no155_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:45 2005
         (213 letters)



>mm_chr2_147778942_147779554
          Length = 613

 Score =  319 bits (165), Expect = 7e-92
 Identities = 201/213 (94%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctgtgagtgtgtctggtcctggggttgtctttgtgctcacagatctgaggttgataat 60
           |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 347 atctatgagtgtgtctggtcctggggttttctttgtgctcacagatctgaggttgataat 288

                                                                       
Query: 61  gcgcactgatgatgattcctttgctttacatccgttgtacttgtttttatcctctgggct 120
           | ||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||| |
Sbjct: 287 gtgcactaatgatgattcctttgctttatatcagttgtacttgtttttatcctctgggtt 228

                                                                       
Query: 121 gaattttgggagcttaaaactgtttgcgccaggcatggtggcgcaggcctttaatcccag 180
           ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 227 gaattttcggagcttaaaactgtttgcgccaggcatggtggcgcatgcctttaatcccag 168

                                            
Query: 181 cacgtgggaggcagaggcaggcggatttctgag 213
           ||| |||||||||||||||| | ||||||||||
Sbjct: 167 cacttgggaggcagaggcagccagatttctgag 135


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space:   123216
Effective search space used:   123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)