BAC Information

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BAC

Clone NameMSMg01-155N11
Chromosome2 (Build37)
Map Location 174,684,927 - 174,685,156
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664880, LOC100043912, LOC664901, Stx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2, LOC664967, LOC100043757, Edn3
Downstream geneLOC545487, LOC100043760, LOC100043761, LOC620790, LOC665001, LOC100043762, LOC100043763, LOC100043764, LOC100043914, LOC100043915, LOC668009, LOC100038953, LOC620804, LOC100039000
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155N11.T7 (MSMg01no155_n11.b1)MSMg01-155N11.TJ (MSMg01no155_n11.g1)
ACCAG356743AG356744
length729748
length of high quality
(start - end)
300 (69 - 368)230 (79 - 308)
definitionCHROMAT_FILE: MSMg01no155_n11.b1 PHD_FILE: MSMg01no155_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:50 2005CHROMAT_FILE: MSMg01no155_n11.g1 PHD_FILE: MSMg01no155_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATAATTTGCCGGCGCTAAACGACTCCTATAGAACAGAGGATCCGCGGA
ATTCTATTCCCAAACGCGATGTGTTTTAACCATATTCATCCCATTCCTTC
CAGATCTACTCCTACCCTCAAGCTCCAGTCCTTCCTAACTTTCTGTCCTC
CTTCCGTCTATATTAGCCCACTTGTTCCAGTTTGTGCTGCCCAGGTACCC
TTGGTTGTAGCCTCAGGGTTGACCTACCAAGGGTCACACACCCTCAAAGA
AAATGGATTCTCTCTTCTCAAGAAACCAACAACAGTTAACAACTCCTAGG
CTAGAGGTAGAGTTTTGTGAGCACTTCCTACCTCCATGATGGGCTGTTGT
TTGTTTTGATCTTGTCCAGGTCTTACACAATTGTGGTCTATAATCACAGC
TGTGGCGAGCTCGTGAGTCTAACTGCTCTTCATAACCTGGAGTCATTGTT
TCTCCTTCCTCCTCTCCAAGCTCATACAATCCTTCAACTCCCTTTTCCTT
GATGGTCTTTGAACCCTGCGGTCAGGAACACCCGCACGAAGTCTCATCCA
TGAATGAGTACCCCCCAGCTCCCGTGACCCGGTATGGGCTTCCGCATTGC
CTCTCATTTTTCTCCACATTAACGCTTCTCTGCGCAGGTCTGATAACTGA
CCCCACCTGTGGCCCTCCCCTACTCCGCCTTTTACCCCCCTTTCCCACCA
CTCACCCTTTTATCCCCACCCCCCATTAC
ATGAAGTGGGAGGCCTGGAGGCCGCCCTGNTACTGTTTTTAGGNGAACCA
TAGTACCATAACAGCACATTCGNTGGNATACACTCCCAGTCTCTGGGTCT
GGTTTTTTTGGTCAGTGCCCAACACCACTGGCTGTTCGAGGGTTTTTAGT
GGGGCTCTGTGAAAACAGCGGGGTGTTCAGGGCATCTTGGACCCATAGTG
AACAGAAGTCAGGCTTGTGGCGACCCTCAGAAGTATCTTTAGCTTCTGCT
CCATGTTTCCCAGAGGTACCTACTGCCATGTAAATGCTGTAGTCCAGAAC
AAAACATTTANATCNTTGAATTAATAAACAGTTCTTTCTGTGTTACTTAA
TTGTGGAACACATGCCCAGAGAAGCACCCAGAAACACCGTCTCCCTATAG
GAGGTGAGAGTGGGTCTCTTTCTTAAGGGAGGACTGGTTTCAGGAGTGGG
CTCCCTGGCTGTCTCCGGGCTGCGGAAGATGGAGGCTGAAGTTTTCTCTC
ATTTCGTTTACCCCCTCTCCTCTCCCCCCAGGGTCCCTCCCTATCATATT
CAATCGTTAACCTTCTGTTACATCGTATTTCGCCCACCCTCTTCTTCCCG
CCCTCTCTTTTCCCCTCTTTTCACCATCTCCCTCACCGACATACCCCCTA
TGTTTTTTTTTTTTCTTCGTCCTCCTCCTCCATCAAGGCCCTCCGGTGCC
CAATCTTGCCTCAACATGCCTATACCTTCGTCCTGTCGCACTACTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_n11.g1 MSMg01no155_n11.g1 CHROMAT_FILE:
MSMg01no155_n11.g1 PHD_FILE: MSMg01no155_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:50 2005
         (230 letters)



>mm_chr2_174684727_174685356
          Length = 630

 Score =  408 bits (211), Expect = e-118
 Identities = 226/231 (97%), Gaps = 2/231 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacactcccagtctctgggtctggtttttttggt-cagtgcccaacaccactggctgttc 59
           |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 430 tacactcccagtctctgggtctggtttttttggtcca-tgcccaacaccactggctgttc 372

                                                                       
Query: 60  gagggtttttagtggggctctgtgaaaacagcggggtgttcagggcatcttggacccata 119
            ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 371 aagggtttttagtggggctctgtgaatacagcggggtgttcagggcatcttggacccata 312

                                                                       
Query: 120 gtgaacagaagtcaggcttgtggcgaccctcagaagtatctttagcttctgctccatgtt 179
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gtgagcagaagtcaggcttgtggcgaccctcagaagtatctttagcttctgctccatgtt 252

                                                              
Query: 180 tcccagaggtacctactgccatgtaaatgctgtagtccagaacaaaacatt 230
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tcccagaggtacctactgccatgtaaatgctgtagtccagaacaaaacatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)