BAC Information

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BAC

Clone NameMSMg01-155N12
Chromosome2 (Build37)
Map Location 28,252,525 - 28,445,715
singlet/doubletdoublet
Overlap geneGm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5
Upstream geneVav2, D2Bwg1423e, Brd3, Wdr5, Rxra, Col5a1, Fcnb, Olfm1
Downstream geneGfi1b, Tsc1, 1700026L06Rik, 1190002A17Rik, LOC665643, Gtf3c4, Ddx31, Barhl1, LOC100033452, 1700101E01Rik, LOC100039666, Ttf1, Setx, Ntng2, Crsp8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155N12.T7 (MSMg01no155_n12.b1)MSMg01-155N12.TJ (MSMg01no155_n12.g1)
ACCAG356745AG356746
length693703
length of high quality
(start - end)
399 (43 - 441)292 (58 - 349)
definitionCHROMAT_FILE: MSMg01no155_n12.b1 PHD_FILE: MSMg01no155_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:50 2005CHROMAT_FILE: MSMg01no155_n12.g1 PHD_FILE: MSMg01no155_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,445,317 - 28,445,715)(28,252,525 - 28,252,816)
sequence
CTCACTCGGAGCGAGGATCCGCGGAATTCTTTTACCCGATAGAAACGCTC
TATATCGGCTGGAGATGCAGCTCAGTGGTTAAGGACCCAGGTTCAATTCC
AAGCACCTACATGGTGGCTCACAACCATTTGTACCTCCAGTCCCAGGGGA
TTTGATGACCTCTTCATTTTTACAGTATTTGTCTTTAATGGAGCAAAGAT
TCATATTATGACTTATAAGTAGTCACTAAAAATGCATATATTAGAGGAAA
CATAGAACATAAAATGTAAATAGTATAGGGGGGCTGGATAGATGGTTCTG
CTGTTAATAACACTTGCTGCTCTTGCAAAGGACCTGGGTTTGGTCCCAGA
AGCCACATGGCAGCTCACAACCACCTGTAACTCCTTTCAAGGGAGATCTG
ACTTTTTGGATCTTCTGGGCACCTTCACTTACACACACACACACACACAC
ACACACACACACACACACACACACACACACACACTCATGCGCGTGCGCCT
ATAATTAAAAACTAGAACAGATCTAACTATATAAAATCCGTATAAAGAAG
GAAGTAAAGGGCATTTACATATACTCAATTTGGTTGATAGAATAAAAAAA
TTATGAAAGAGTTGAACCTACTTATATTACGGATTGTATTAAATGCCAAC
GTATTATATATTTCACCTAACACACCATGGACATCCGACACCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXACTCTGACAGCATCCCAGCCAGCAAGAAGCAGGGCTCCACTGG
CCATAAAGCCATCACTCATCTCATGACTAAAGGAGACAGGCTTGCCAAGG
GGTGGCACTAGTGAACACAGCACAGACCTGGCTTAAGGCTGTGGACAACA
GGCCTCCACCAAGGGGAGCCCATGAAAATTTAAAGACATCCTGCTGTCTG
CCAAAGAGCATCATTTTAAGGCAGGCAAGCAGGGGCTGCTGTTCCTCTAA
CTTCCTTCCTCTCATGACTGGGAATGCCTGTCACTACCCTCCAAGGTGAC
AAGATGTCAGGGGGTGGCTCCCAAACCTGGATTTCTCAAGCCTCCTTTAC
CTGTATCCAGCCTTCAGTCTCCCACTGTGGCCTTCCCCAGGGTCAAAAAG
AGGGTACTGCCCCTCATCCCAGGACTTCTCCCTGGAGGCCTTCAAGGCAA
ACCGCTTAGCCCTTGGTCTAGTGACCCAGTGCCCTCCACAAAAGGCTGCC
TCACACCTCCATGCCCTTCCAAGTTGCTTTCCACAATCAATTTCCCCGCC
ATGACACCACAGGAAAACCTCATTATTTCAGACACTGCTAATCTACGCCT
TTGTGACCACCCTGCCTAAATCAGCACAACCCCGCCTTTGCTTTCTCTCC
GAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_n12.b1 MSMg01no155_n12.b1 CHROMAT_FILE:
MSMg01no155_n12.b1 PHD_FILE: MSMg01no155_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:50 2005
         (399 letters)



>mm_chr2_28445156_28445954
          Length = 799

 Score =  741 bits (383), Expect = 0.0
 Identities = 395/399 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacgctctatatcggctggagatgcagctcagtggttaaggacccaggttcaattccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaacgctctatatcggctggagatgcagctcagtggttaaggacccaggttcaattccaa 501

                                                                       
Query: 61  gcacctacatggtggctcacaaccatttgtacctccagtcccaggggatttgatgacctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gcacctacatggtggctcacaaccatttgtacctccagtcccaggggatttgatgacctc 441

                                                                       
Query: 121 ttcatttttacagtatttgtctttaatggagcaaagattcatattatgacttataagtag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttcatttttacagtatttgtctttaatggagcaaagattcatattatgacttataagtag 381

                                                                       
Query: 181 tcactaaaaatgcatatattagaggaaacatagaacataaaatgtaaatagtataggggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcactaaaaatgcatatattagaggaaacatagaacataaaatgtaaatagtataggggg 321

                                                                       
Query: 241 gctggatagatggttctgctgttaataacacttgctgctcttgcaaaggacctgggtttg 300
           |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gctggagagatggctctgctgttaataacacttgctgctcttgcaaaggacctgggtttg 261

                                                                       
Query: 301 gtcccagaagccacatggcagctcacaaccacctgtaactcctttcaagggagatctgac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 260 gtcccagaagccacatggcagctcacaaccacctgtaactcctttcaagggtgatctgac 201

                                                  
Query: 361 tttttggatcttctgggcaccttcacttacacacacaca 399
           |||||||||||||| ||||||||||||||||||||||||
Sbjct: 200 tttttggatcttctaggcaccttcacttacacacacaca 162


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no155_n12.g1 MSMg01no155_n12.g1 CHROMAT_FILE:
MSMg01no155_n12.g1 PHD_FILE: MSMg01no155_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:50 2005
         (292 letters)



>mm_chr2_28252325_28253016
          Length = 692

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctgacagcatcccagccagcaagaagcagggctccactggccataaagccatcactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctgacagcatcccagccagcaagaagcagggctccactggccataaagccatcactc 260

                                                                       
Query: 61  atctcatgactaaaggagacaggcttgccaaggggtggcactagtgaacacagcacagac 120
           ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 atctcgtgactaaaggagacaggcttgccaaggggtggcactcgtgaacacagcacagac 320

                                                                       
Query: 121 ctggcttaaggctgtggacaacaggcctccaccaaggggagcccatgaaaatttaaagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggcttaaggctgtggacaacaggcctccaccaaggggagcccatgaaaatttaaagac 380

                                                                       
Query: 181 atcctgctgtctgccaaagagcatcattttaaggcaggcaagcaggggctgctgttcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcctgctgtctgccaaagagcatcattttaaggcaggcaagcaggggctgctgttcctc 440

                                                               
Query: 241 taacttccttcctctcatgactgggaatgcctgtcactaccctccaaggtga 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taacttccttcctctcatgactgggaatgcctgtcactaccctccaaggtga 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)