BAC Information

Click to search

BAC

Clone NameMSMg01-157L12
Chromosome2 (Build37)
Map Location 17,616,033 - 17,616,320
singlet/doubletsinglet
Overlap geneNebl
Upstream genePlxdc2, 4930515L03Rik, LOC383665
Downstream geneLOC100041319, LOC100041047, 1700113O17Rik, A930004D18Rik, 2810030E01Rik, Mllt10, LOC641254, Dnajc1, LOC100041388, LOC623325, LOC625815, Commd3, Bmi1, EG667477, LOC100041448
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157L12.T7 (MSMg01no157_l12.b1)MSMg01-157L12.TJ (MSMg01no157_l12.g1)
ACCAG358123AG358124
length752730
length of high quality
(start - end)
314 (39 - 352)288 (69 - 356)
definitionCHROMAT_FILE: MSMg01no157_l12.b1 PHD_FILE: MSMg01no157_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:07 2005CHROMAT_FILE: MSMg01no157_l12.g1 PHD_FILE: MSMg01no157_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
GTGCCAGAGGGTTACAATATGTTTTTTAAATTACTGTATTTTGTTTGTTT
TGCGTGCAAGTGTGTTGTGTGGGGAGGGGCAGCATGTGGAGGCCAGCGGA
CAACTTGCCAGGACGGGTTCTCTCCTTCCATCATGTGGCTTAGGGGATGG
AACATGGGTAGTGAGGTGGGCCAGCCAGTGCTTTCTTTACCCACTGAGCC
ACACTGCTGAACAGAGAGAGGCTTATAGTGCTTCTAATTAAACAGAATCC
ATGCAGACAAAATGATTGTTCACAGGGTGAAGGAAGGGGTTTGGGGAGAC
TTTACATACTTTCCGGAGCAAGACCACANAGTGTGAAGANAGTGTTCATT
TCTTTTTCCCCCCATAAAAAAAAAAATGTGGCCGGGCCGGGATACCATCT
AGATATTCTAAGACAGGCATATTCCTTGTCCACCACATTAGCCGAACTAT
TGTTCCCATCCTAATAGAGATCCTATTTCCAAATTCCGTTCTATTTTATT
CTTATTATTCCTCTTTTGTTATCGTTTACCCATCATTTAATACTAATTCT
TTATTTTTTTTTCTCGCATTTTACCTATTTTGTTTGTAATTTCTTCTTCC
ACAACCGAAACCTCTCCCTCTTTCCTTAATTCCAACCGTTTATATATTCC
TTACTCGGCCCCTACTGTTTTCCGCCCCTCAATTAATTTATTATTAAATC
CG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCCCCTGGGGTTTTCAGCTTTTGAAGCCCATT
CAGGGTCATGGTTACCACATCATTCTTGGTCATTGTTTATGACTGATATC
ATCCAAACAAAGGCTTCATGGGAATGGAGGGGGCAGCAGAGAATGATGTG
GATGGAAGGGATCATGCTTTCTACCCATCAGCGGCCACTTCTCTCTCTGA
GACCCCCTCAGAGATGAATGAGGATGATGACCACGAGGGTGAAGTTGCAA
GGATCATAAAATTGGCTTCTTATTGAAATAGAAACAGGGGCAGTCTTATG
TTATTGTTTCTAGCGACCACCCCGTCCTGATTTGCACTAAACACCTGCAA
AATAGGCTTGCTTTCTTCTAGAAAATTCTAAGGTCAGAAGAGATGGAGAG
AGAGACAGATCGGCAGGTAAAAGTGGTTGTCATGCAAGCCTGACTACCTG
AGTTTAACCACCAGATTCCACAGTGGAAAGAGAGAACTGATTCCCAAAAC
AGTCCTCTGACATTCACACATGCTATGGCACGCACATTCCCGAGCACGCA
CACACACACACACACACACACACACACACACACACACACACTCACACTAA
TTTGCTTATAAAGAGGTCAATGTATGTATGTAAGTAAGAGAGATAGTTTG
GGTTCCATGGAATTCAATATTCAGTAGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_l12.g1 MSMg01no157_l12.g1 CHROMAT_FILE:
MSMg01no157_l12.g1 PHD_FILE: MSMg01no157_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:07 2005
         (288 letters)



>mm_chr2_17615833_17616520
          Length = 688

 Score =  526 bits (272), Expect = e-154
 Identities = 284/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccctggggttttcagcttttgaagcccattcagggtcatggttaccacatcattcttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcccctggggttttcagcttttgaagcccattcagggtcatggttaccacatcattcttg 260

                                                                       
Query: 61  gtcattgtttatgactgatatcatccaaacaaaggcttcatgggaatggagggggcagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 gtcattgtttatgactgatatcatccaaacaaaggcttcatgggaatggagagggcagca 320

                                                                       
Query: 121 gagaatgatgtggatggaagggatcatgctttctacccatcagcggccacttctctctct 180
           ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 321 gagaatgatgtggatggaagggaccatgctttctacccatcagtggccacttctctctct 380

                                                                       
Query: 181 gagaccccctcagagatgaatgaggatgatgaccacgagggtgaagttgcaaggatcata 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagaccccctcagagaggaatgaggatgatgaccacgagggtgaagttgcaaggatcata 440

                                                           
Query: 241 aaattggcttcttattgaaatagaaacaggggcagtcttatgttattg 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaattggcttcttattgaaatagaaacaggggcagtcttatgttattg 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)