Query= MSMg01no157_o24.b1 MSMg01no157_o24.b1 CHROMAT_FILE:
MSMg01no157_o24.b1 PHD_FILE: MSMg01no157_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:23 2005
(321 letters)
>mm_chr2_67879133_67879853
Length = 721
Score = 600 bits (310), Expect = e-176
Identities = 316/318 (99%)
Strand = Plus / Minus
Query: 4 ggaattctccaggtattcacagctccaaattcctcagcaccatctgcttcataccaattt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ggaattctccaggtattcacagctccaaattcctcagcaccatctgcttcataccaattt 462
Query: 64 gcagtcctctctgttagtttctccctacatcctgccagtgttgcccctgcaaataatcat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gcagtcctctctgttagtttctccctacatcctgccagtgttgcccctgcaaataatcat 402
Query: 124 gattatttttactccgtgtagccattagccctggcttctgccagagattattggcctgga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gattatttttactccgtgtagccattagccctggcttctgccagagattattggcctgga 342
Query: 184 ataactgcttttaaatctaaagagttgggtgttgtcctcaagaaagagaaagttaatgac 243
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 341 ataactgcttttaaatctaaagagttgggtgttttcctcaagaaagagaaagttaatgac 282
Query: 244 cacagtaacttcattgaattctatttcacaagacgtggcattagaaaccaagattaccca 303
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 281 cacagtaacttcattgaattctatttctcaagacgtggcattagaaaccaagattaccca 222
Query: 304 aagggcacatggtctctg 321
||||||||||||||||||
Sbjct: 221 aagggcacatggtctctg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space: 222144
Effective search space used: 222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no157_o24.g1 MSMg01no157_o24.g1 CHROMAT_FILE:
MSMg01no157_o24.g1 PHD_FILE: MSMg01no157_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:23 2005
(660 letters)
>mm_chr2_67759551_67760610
Length = 1060
Score = 1178 bits (609), Expect = 0.0
Identities = 647/661 (97%), Gaps = 4/661 (0%)
Strand = Plus / Plus
Query: 1 agcacagtgagggacttaaactcaaaaaattcaaaacatgactaatttctttcctataat 60
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 agcacagtgagggacttaaactcaaaaaattcaaaacatgactaatggctttcctataat 260
Query: 61 catttcttctttttccagttctcactaccttcttattaattgataatactaagaatgctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catttcttctttttccagttctcactaccttcttattaattgataatactaagaatgctg 320
Query: 121 gatcacaatacgccagcttgaagctccagtgataacagaaattgaaaatatttaaaagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatcacaatacgccagcttgaagctccagtgataacagaaattgaaaatatttaaaagta 380
Query: 181 aactcaagtaacacacttataattactttatgaataaactttgcaaagcttatgtgatag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactcaagtaacacacttataattactttatgaataaactttgcaaagcttatgtgatag 440
Query: 241 agatctactcattcaatatattcatttatattttagttattatttttaagtattattttt 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 441 agatctactcattcaatatattcatttatattttagttattatttttaagtaggactttt 500
Query: 301 ttccccatcacataacatttaaaaaattgaggtagattcttgagtatgtaacccaggatc 360
||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttccctatgaaataacatttaaaaaattgaggtagattcttgagtatgtaacccaggatc 560
Query: 361 acctcaaatttgatatctttctgcctgagcctaagtgttgagattgccaatacaggctaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acctcaaatttgatatctttctgcctgagcctaagtgttgagattgccaatacaggctaa 620
Query: 421 ggagtaaagaacaaatgtgtttctacctttattttccaaagacataggtaaaaaataaat 480
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 621 ggagtaaagaacaaatgtgtttctacttttattttccaaagacataggtaaaaattaaat 680
Query: 481 tacagttcttgctagtctttgaatctcattcttctcatccaccaattcagggcatttgta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tacagttcttgctagtctttgaatctcattcttctcatccaccaattcagggcatttgta 740
Query: 541 atctcttctcgctctatcttcctgagatgctcttgaaacccttcaacctctgagtctgcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atctcttctcgctctatcttcctgagatgctcttgaaacccttcaacctctgagtctgcc 800
Query: 601 ttgtac-taactagtctacccacgctcaatgaagtcactaatcttttctgagcatccgtt 659
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttgtacgt---tagtctacccacgctcaatgaagtcactaatcttttctgagcatccgtt 857
Query: 660 t 660
|
Sbjct: 858 t 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
