BAC Information

Click to search

BAC

Clone NameMSMg01-158D07
Chromosome2 (Build37)
Map Location 178,815,942 - 178,816,223
singlet/doubletsinglet
Overlap genenone
Upstream genePhactr3, Sycp2, Ppp1r3d, 9030418K01Rik, Cdh26, LOC100039368, LOC665264
Downstream geneLOC100043168, LOC100039413, Cdh4, Taf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158D07.T7 (MSMg01no158_d07.b1)MSMg01-158D07.TJ (MSMg01no158_d07.g1)
ACCAG358484AG358485
length754730
length of high quality
(start - end)
89 (83 - 171)282 (79 - 360)
definitionCHROMAT_FILE: MSMg01no158_d07.b1 PHD_FILE: MSMg01no158_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:42 2005CHROMAT_FILE: MSMg01no158_d07.g1 PHD_FILE: MSMg01no158_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACCTT
GGCTGTGAAGATGCAGGTCAAGCCAAAGAATTGGCCTTGGCCACTTGGGC
TTGCCCAGGTGAATTCAGAGAACTTGACATCTGCTGAAAGTCTTAGACAC
ATTTACAAGTGCAATGAAAAGTCACGACAGTCACCAGGATATTATCCCCA
GGCGAAAGCCAGACCGTGACCATGCCGGGATTCCTGTATGACAAAACTTA
ACACTGTGGCTCAACTGGATAACAGAAGCCATACCAGCCAGCAACAACTC
CTGGAGCTTTCTGGTCTTGCCCCTCACTCCAGTAGCTAACTATATATAGA
CCATTTTTTTTGGAGCCACGGCTCCTTGCCCAAGAATACTTGTTTGCTGC
CCTTGCACACCCCCCCCCTCTGAATCCCAGAACCTACCCCGGGTGCCTTA
TCTCCTCCTGCAATTACCGCTCTAGCTGACCTGCCATTTCCTCCTGTGCA
CTTTCGCCTTCTCTCTGTATTCCTTTTTTCCCTCATGCACATCCTCCCCC
TGCCTTTAATCTCCCAGCGATGAACCTTCCCTCCACCTGTTTTAATTACC
GCCCCTTCCCCCATGTTTCTGCTGTTCCCCTATTCCCCCCCCCTCCGATG
CCCCTCCGTTCTGCCACCAACCTTATCTCCCTCGCCCGCCACCTACATTA
TTTCCCGCAACCTCCCTATTACCGTCCCCCCCTATTTTCTCTCCCCCCTC
TTCN
ACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAGGGTTGGAGAGGCTGTTTT
TGCTCCTCTCTTGGGTGGGCTAGCCCAGGTATGAGATAAAACCCCTTTAC
TACTGCCACCAACTCTGATAATAGAGCTGAAACTGAGGAAATCTAAGCTC
GGAGAGAAAAAGAGACTGACTCCCACCCACACCATTATAACTTCTGGATT
CAGACAGCATGGTGAACACAGCTTTCTCTCAGAAGTCCTGTGCACTCTCT
TCTGGGCCAGCCAAAGCATCGATATTTCAGAGATACGCTTCAAGATACTT
TTCCTCAACCCCTTTTGAGTTCGCCCCCCCCGTCACCTCCCTAGAGCTGC
CTCAAAGTCTGGTTACCCCCCACACAGAACTTTGTGTTCCAGGAAGCTTA
AGATAGCTTGCTCACAAGGGAATCAGAGCCCACAGCTGGGGAGGGATGCT
ATCCTCTACTGCGCTTACCCTGGTCCTCAAAGCTAAACAGTGTAGTAACT
GTATCTCCCTCACCCCACGCTTCCACTTCTCACTGCCTGGCAAGCTCACA
CCACTCCTGCACAGTTTTAAAACTTAAGTTCAAATTTGACCTCCTTCGTG
GCATCCAGTCACAGGGCCATTAGCACAGGTGCTAACCTCCTCTGTGGCTC
ATTTGCTGAGCACCCACTGAACTTCTGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_d07.g1 MSMg01no158_d07.g1 CHROMAT_FILE:
MSMg01no158_d07.g1 PHD_FILE: MSMg01no158_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:42 2005
         (282 letters)



>mm_chr2_178815742_178816423
          Length = 682

 Score =  522 bits (270), Expect = e-153
 Identities = 279/282 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagggttggagaggctgtttttgctcctctcttgggtgggctagcccaggtatgagata 60
           ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 482 tgagggttggagaggctgtttttgctcctctcttgggtgggctagccaaggtgtgagata 423

                                                                       
Query: 61  aaacccctttactactgccaccaactctgataatagagctgaaactgaggaaatctaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aaacccctttactactgccaccaactctgataatagagctgaaactgaggaaatctaagc 363

                                                                       
Query: 121 tcggagagaaaaagagactgactcccacccacaccattataacttctggattcagacagc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 362 tcggagagaaaaagagactgactcccacccacaccattataacttctggattcagagagc 303

                                                                       
Query: 181 atggtgaacacagctttctctcagaagtcctgtgcactctcttctgggccagccaaagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atggtgaacacagctttctctcagaagtcctgtgcactctcttctgggccagccaaagca 243

                                                     
Query: 241 tcgatatttcagagatacgcttcaagatacttttcctcaacc 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tcgatatttcagagatacgcttcaagatacttttcctcaacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)