BAC Information

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BAC

Clone NameMSMg01-158M22
Chromosome2 (Build37)
Map Location 11,005,238 - 11,005,527
singlet/doubletsinglet
Overlap genenone
Upstream geneKin, Itih2, Itih5, Sfmbt2, LOC100040690
Downstream geneLOC100040703, LOC667192, Prkcq, LOC100040733, LOC100040898, LOC667211, Pfkfb3, Rbm17, Il2ra, Il15ra, Fbxo18, Ankrd16, EG635919, LOC667247
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158M22.T7 (MSMg01no158_m22.b1)MSMg01-158M22.TJ (MSMg01no158_m22.g1)
ACCAG358916AG358917
length712714
length of high quality
(start - end)
317 (32 - 348)294 (64 - 357)
definitionCHROMAT_FILE: MSMg01no158_m22.b1 PHD_FILE: MSMg01no158_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:24 2005CHROMAT_FILE: MSMg01no158_m22.g1 PHD_FILE: MSMg01no158_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTTCAG
TTCTGAGCATAATTTTTTAATGGAGTTATTTGATTTTCTGAAGTCCACCT
TCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTGATTTAGGA
TAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGAC
GGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCATGAAGTCCCATTTGT
CAATTCTCAATCTTACAGCGCAAGCCATTGCTGTTCTATTCAGGAATTTT
TCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCATCTATAAT
NNTTAGCGTCCCTGGCTTCCCCGTGAAGTTCCTTGATCCACTTAGATTTG
ACCTTACCACAAGGAGATAGAATATGGATCGATTCGCATTCTTCTACATG
ATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTTC
TACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGTG
TGGGTTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTG
TCACTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTAAAG
CTTTAGGTCAGGGATGGTGATTCCACCAGAGGTTCTTTTATCCTTGAGAA
GAGTTTTTGCTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCTTGAGTAAGTGACTAAGCATGGAAGAGTGAGCCCA
AGTTAAGTTTTGAGGACCAGCCAGGCAGTTTTTCAAAGCAGACACTCCTA
TTTTGTGTTCCTGCCAGAAATGCATTCGAGTTTCAGCTCCACATGTTAGT
CAGCTGTGGCAGCTGTCTCTCTCCCCACAGGCGTGGAGTGGTTGGTGTGT
TGCTGTGTTCTCCCCACAGGCGTGAAGTGGTTGGTGTGTTGCCATGTTCT
CCCACAGGCATGGAGTGTTTGGTGTGTTATCGTGTTCCATTTGTGTGCTT
TTGTGGTCCTTGCGCCCCCCCCCCCTACTCATGGGCTTGCTAGACATCTG
TGTTTCTTCCCCGCAAAACCAAGAAATTAGACTCTGGCTGGTAAAGTAAA
TGGTCTGCTTGTCTTTCTACTGATGGGATTTAGAAATTCTTCTTATATTC
TCGAGACAAATTTCTTGTCAATCTATGAATTGCAAATGTCTACTCTCATT
CTGTGAGTTATTTAATTCTTGAGACAGTTCCTGGAAGCACAAACTATGCC
AATTTTGATGAAGTATAATTTACTTATTCTTTCTTTTGATGTCTGCATTT
TCAATCATGTCTAAGAACGTCTCATCCAGTCCAAGGTCTTGTAAATTTCC
TTGTTTTCTTTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_m22.g1 MSMg01no158_m22.g1 CHROMAT_FILE:
MSMg01no158_m22.g1 PHD_FILE: MSMg01no158_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:24 2005
         (294 letters)



>mm_chr2_11004897_11005590
          Length = 694

 Score =  524 bits (271), Expect = e-153
 Identities = 286/291 (98%), Gaps = 2/291 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttgagta-agtgactaagcatggaagagtgagcccaagttaagttttgaggaccagcc 59
           ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tcttgagtata-tgactaagcatggaagagtgagcccaagttaagttttgaggaccagcc 573

                                                                       
Query: 60  aggcagtttttcaaagcagacactcctattttgtgttcctgccagaaatgcattcgagtt 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 572 aggcagtttttcaaagcagacactcctattttgtgttcctgccagaaatgcatttgagtt 513

                                                                       
Query: 120 tcagctccacatgttagtcagctgtggcagctgtctctctccccacaggcgtggagtggt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tcagctccacatgttagtcagctgtggcagctgtctctctccccacaggcgtggagtggt 453

                                                                       
Query: 180 tggtgtgttgctgtgttctccccacaggcgtgaagtggttggtgtgttgccatgttctcc 239
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 452 tggtgtgttgctgtgttctccccacaggcatgaagtggttggtgtgttgccatgttctcc 393

                                                              
Query: 240 cacaggcatggagtgtttggtgtgttatcgtgttccatttgtgtgcttttg 290
           ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 392 cacaggcatggagtggttggtgtgttatcgtgttccatttgtgtgcttttg 342


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)