Query= MSMg01no158_p02.b1 MSMg01no158_p02.b1 CHROMAT_FILE:
MSMg01no158_p02.b1 PHD_FILE: MSMg01no158_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:33 2005
(684 letters)
>mm_chr2_89632502_89633587
Length = 1086
Score = 1151 bits (595), Expect = 0.0
Identities = 612/619 (98%), Gaps = 4/619 (0%)
Strand = Plus / Minus
Query: 4 ggaattctcattgaaacatgtttgttggaaacaagacgaatttggaaaattttttgtgtt 63
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 618 ggaattctcattgaaacatgtttgttggaaacaagacaaatttggaaaattttttgtgtt 559
Query: 64 tgccaaacaaccaaaaaaaaagcatatagataaattaaatatttttggtcaacatagtaa 123
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tgccaaacaacc-aaaaaaaagcatatagataaattaaatatttttggtcaacatagtaa 500
Query: 124 aaatataaatatttttctcaaagaagaataagatctgagatgtgagttttgtgagaccac 183
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 499 aaatataaatgtttttctcaaaggagaataagatctgagatgtgagttttgtgagaccac 440
Query: 184 cctcaagagatattagctaaatatgtctgggatgcaatgaaatacagtagatattttaat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cctcaagagatattagctaaatatgtctgggatgcaatgaaatacagtagatattttaat 380
Query: 244 atatgttttaagtatataaactaattaatggagaaacagattaataaggttatatatcat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 atatgttttaagtatataaactaattaatggagaaacagattaataaggttatatatcat 320
Query: 304 gtattttgtctttgttgaagactgatttagtttgctttccagtttgctaaaagagaa--- 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtattttgtctttgttgaagactgatttagtttgctttccagtttgctaaaagagaagtg 260
Query: 361 aaatacattgcatgcattaagaaaccatcattgacttattactttagtttatgtgctatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aaatacattgcatgcattaagaaaccatcattgacttattactttagtttatgtgctatt 200
Query: 421 atatttattatatataaattacacacacacacacacatatgaaattctaaattgcagatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 atatttattatatataaattacacacacacacacacatatgaaattctaaattgcagatt 140
Query: 481 atctgcactgcttacagtttaacaggacagatatgtatttatgtttgagagctctatgca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 atctgcactgcttacagtttaacaggacagatatgtatttatgtttgagagctctatgca 80
Query: 541 gggttttatatggatatctttaaataatccctggaagcagagaagtgtgttgtgtaatgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 gggttttatatggatatctttaaataatccctggaagcagagaagtgtgttgtgtaatgt 20
Query: 601 aacatagagttattataca 619
|||||||||||||||||||
Sbjct: 19 aacatagagttattataca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1086
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1076
Effective search space: 725224
Effective search space used: 725224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no158_p02.g1 MSMg01no158_p02.g1 CHROMAT_FILE:
MSMg01no158_p02.g1 PHD_FILE: MSMg01no158_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:33 2005
(287 letters)
>mm_chr2_89525042_89525728
Length = 687
Score = 524 bits (271), Expect = e-153
Identities = 283/287 (98%)
Strand = Plus / Plus
Query: 1 caatcaataattgataatcttgaaattccaagtatcccactgtataacaatttgcatcca 60
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 201 caatcaataattgataatcttgaaatttcaaatatcccactgtataacaatttgcatcca 260
Query: 61 gctccgtctctcatttcttatacatcatgctaccttaaattatttataaacgtagggttt 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 gctccgtctctcatttcttatacatcatgctaccttaaattatttataaatgtagggttt 320
Query: 121 tattaaaacaaatcttcaagaagccaatacaactattgacctaataatataaaaacacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattaaaacaaatcttcaagaagccaatacaactattgacctaataatataaaaacacaa 380
Query: 181 taatcaagctacaacatatgtaagttgtataaatcagactgtaatttattggttacatag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 taatcaagctacaacatatgtaagttgtataaatcagactgtaatttattggttatatag 440
Query: 241 aaattgaataataacataactgcttcaaattacactactgccaacag 287
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaattgaataataacataactgcttcaaattacactactgccaacag 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
