BAC Information

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BAC

Clone NameMSMg01-159E05
Chromosome2 (Build37)
Map Location 88,036,742 - 88,037,032
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168
Downstream geneOlfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159E05.T7 (MSMg01no159_e05.b1)MSMg01-159E05.TJ (MSMg01no159_e05.g1)
ACCAG359253AG359254
length731733
length of high quality
(start - end)		322 (47 - 368)291 (76 - 366)
definitionCHROMAT_FILE: MSMg01no159_e05.b1 PHD_FILE: MSMg01no159_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:57 2005CHROMAT_FILE: MSMg01no159_e05.g1 PHD_FILE: MSMg01no159_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:57 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCA
ACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCA
CCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAT
GCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAT
TGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAA
ATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATAT
ATCCAGAAGATGTCCCAATTGTTAAGAAGGACACATGCTCCACTATGTAT
ATAGCAGCCTTATTTATAACCCCCAGAAGCTGGAAAGAACCCAGATGCCC
CTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGT
ACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGG
ATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAA
CTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCAAACCTAGG
ATACCCAAGATATAAGATACCATTTGCTAAACAAATGAAACTCCAGAAGA
ATGAAGACTGAAGTGTGGACCCTATGCCCCC

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAATCCACCACATATTAAAGACAAC
CAAATGTATCTCTGAAAGATTCATGTTTCTTTATTCTCTTTTCAAATTTA
AAAGAGATCTTTGTCTTATAAACTTTATAGAAGGCAAAGATAAGTGTGTT
GATTTATACATTATAACATTTTATTTTAATACACCCCGTCGGTGATCATA
GTCTAATACTTTATCTCTAGAACACTCTTTGGAGCAGACATATACATGTG
AAATTAAAATATATTCTTAGTTAAAATCTGATTTCTTTCCGTTGTTACTG
AATGATACAGACCACATATTATCAGACTCACCCTCGATTTTCATTTTTGC
CAAACAGTGCCAGAGACTTCCCTTGCATTTGAAACGATGAATATTCTTTA
ATACAGTCAAGAATTTGAAGAATCTGAATACTTATATTTAATATTTTGTT
CAGGTGAATGCATTGTTTTAAACATGAAGAAATGTCTACTCTTATATAGA
CTAATATTTCTATGATTGATCTATGTACACAAATGTTGAAGATGAATTAA
AATTCCATCAAATCAGAAGTATTATTTCAAAACAGAAGACAGATTATAAT
GTTAAAATTGTAAGAAGTTAAAATTTTCACAATGGTGTGTAGCTTTCACA
CATGACAGCTGAACTCTCTGACTATCAGATAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_e05.g1 MSMg01no159_e05.g1 CHROMAT_FILE:
MSMg01no159_e05.g1 PHD_FILE: MSMg01no159_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:57 2005
         (291 letters)



>mm_chr2_88036542_88037232
          Length = 691

 Score =  509 bits (263), Expect = e-148
 Identities = 284/291 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatccaccacatattaaagacaaccaaatgtatctctgaaagattcatgtttctttatt 60
           |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 201 aaatccaccacatattaaagacaaacatatgtatctctgaaagattcatgtttctttatt 260

                                                                       
Query: 61  ctcttttcaaatttaaaagagatctttgtcttataaactttatagaaggcaaagataagt 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 ctcttttcaaatttaaaagagatctttgtcttataaactttataaaaggcaaagataagt 320

                                                                       
Query: 121 gtgttgatttatacattataacattttattttaatacaccccgtcggtgatcatagtcta 180
           ||||||||||||||||||||||||||||||||||||  |||| | |||||||||||||||
Sbjct: 321 gtgttgatttatacattataacattttattttaatatgccccatgggtgatcatagtcta 380

                                                                       
Query: 181 atactttatctctagaacactctttggagcagacatatacatgtgaaattaaaatatatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atactttatctctagaacactctttggagcagacatatacatgtgaaattaaaatatatt 440

                                                              
Query: 241 cttagttaaaatctgatttctttccgttgttactgaatgatacagaccaca 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttagttaaaatctgatttctttccgttgttactgaatgatacagaccaca 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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