BAC Information

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BAC

Clone NameMSMg01-159E09
Chromosome2 (Build37)
Map Location 173,876,296 - 173,876,546
singlet/doubletsinglet
Overlap genenone
Upstream geneCtcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912, LOC664901
Downstream geneStx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2, LOC664967, LOC100043757, Edn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159E09.T7 (MSMg01no159_e09.b1)MSMg01-159E09.TJ (MSMg01no159_e09.g1)
ACCAG359260AG359261
length740744
length of high quality
(start - end)
319 (45 - 363)251 (78 - 328)
definitionCHROMAT_FILE: MSMg01no159_e09.b1 PHD_FILE: MSMg01no159_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:58 2005CHROMAT_FILE: MSMg01no159_e09.g1 PHD_FILE: MSMg01no159_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTGTTTAGCTCTGAACCCGATTTTTAATAGGGTTATTTGGTTCTC
TGGAGTCTAACTTCTTGAGTTCTTTGTATACATTAGATATTAGCCCTCTA
TTGGATGTAGGATGGGTAAATATCTTTTCCCAATCTGTAGTTTGCCATTT
TGTTCCATTGACAGTGTCCTTTGCCTTTTAGAAGCGTTGCAGTTGTATGA
GGTCCCACTTGTCAATTGGTGAGCACAGAGCATGAGTCATTGGTGTTCTG
CTCAGGAAAATTTCCCTTATGCCCAAGTGTTGTTCAAGGCTCTTTCCTAC
TTTCTCTTCTATTATATTCACCCGCCCCGGCCTTATGTGGAGGTCCTTGA
TCCACTTGGACTCCCCCCCCCTACAAGGAGATAAGAATGGATCAATTTGC
ATTGTTCTACATGCTGACCACCAGCTGGACTAACCATTTGTTGAAAATGC
TGTCTTTTTTCCATTAGATAATTTTTCCTTCTTTGTCAAAGATCATGTGG
CCATATTGAACCCATCGTGTATGGGCTTATTTCTGCGCCTTCAGTTTTTT
ATCCATTGAACTAACTGTCTGTCTTTGTTCTATTACCATGCTGCTTTCTT
CATATTGCTCTGTATTAATTGTTTGACCCCACCCATGAGGGATTTTTTTT
CAAGTTTTCCTCCCGCTCCATTCATTTTTCTTTCCCCCCC
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCCACGTTAGAGAGAGAAGTTGA
TAAGAGGTTTAAGGAGGTAGAAAGGAAAGGAATAGCGAGTTTTTGCTGCC
TCTTATTTCCTAAAGCATGGGGGGGGGGAGAAGTAAGCAAAGAGCAACCA
ATGAAGCATCAAATGTTCCTTAAAAAAAAAAATTAAAAGGCTCTTTTCTG
TCTCTACCTTGGGACAATGACCTCCCCAGACAGCAGCCCCACAGGCCCCT
TCAAAAGGGCACAATTACCCCCGTGGCGTCTGTCGGTTCTGCTTGACTGG
GAAAAAGGGTTCCCTCCTCCCAGTTCTTAACCACTTATAATCCCAGCCAT
TCCCTGGGCAACCCCCCCCCCGAAAAAAAAAAAAAAAAGCGAACGTGGTA
TCGAGCGCTATTTACCCCTTATCAGCACTGGGGCCCTCGACAGCTTGTCT
TTCGGACTCAACCGGAGCTTCTAAAAGGCCGTGAAAAAGGTCCACCCCTC
TCTATGTCCAGTGCTCACTCCCTGAAAAGGGTTAGTCTTCCCCCCATAGA
AGGGTCTGTCCGTCCTTGCACAAAGGAACTTTGTATTTGAATCCACGATG
ATATAACCGGTAAATGATTTTTTTCAACGCCCAAAAAATGAACTTTTTCC
CCCGAAATCACCCACGCAATTCTGTTATCTTGTTTGGCTTTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_e09.g1 MSMg01no159_e09.g1 CHROMAT_FILE:
MSMg01no159_e09.g1 PHD_FILE: MSMg01no159_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:58 2005
         (251 letters)



>mm_chr2_173876096_173876746
          Length = 651

 Score =  441 bits (228), Expect = e-128
 Identities = 246/254 (96%), Gaps = 6/254 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccacgttagagagagaagttgataagaggtttaaggaggtagaaaggaaaggaatagcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 cccacgttagagagagaagttgataagaggtttaaggaggtagaaaggaaatgaatagcg 260

                                                                       
Query: 61  agtttttgctgcctcttatttcctaaagcatgggggggggg--agaagtaagcaaagagc 118
           ||||||||||||||||||||||||||||   ||||||||||  |||||||||||||||||
Sbjct: 261 agtttttgctgcctcttatttcctaaag---ggggggggggggagaagtaagcaaagagc 317

                                                                       
Query: 119 aaccaatgaagcatcaaatgttccttaaaaaaaaaaa-ttaaaaggctcttttctgtctc 177
           |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 318 aaccaatgaagcatcagatgttccttaaaaaaaaaaaattaaaaggctcttttctgtctc 377

                                                                       
Query: 178 taccttgggacaatgacctccccagacagcagccccacaggccccttcaaaagggcacaa 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 taccttgggacaatgacctccccagacagcagccccacaggccccttcaaaagggcacaa 437

                         
Query: 238 ttacccccgtggcg 251
           ||||||||||||||
Sbjct: 438 ttacccccgtggcg 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)