BAC Information

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BAC

Clone NameMSMg01-159I04
Chromosome2 (Build37)
Map Location 101,925,330 - 101,925,607
singlet/doubletsinglet
Overlap geneLdlrad3
Upstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik, LOC100043302, Commd9
Downstream geneLOC674202, Trim44, Fjx1, E430002G05Rik, Slc1a2, Cd44, Pdhx, Apip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159I04.T7 (MSMg01no159_i04.b1)MSMg01-159I04.TJ (MSMg01no159_i04.g1)
ACCAG359426AG359427
length736736
length of high quality
(start - end)
189 (129 - 317)277 (91 - 367)
definitionCHROMAT_FILE: MSMg01no159_i04.b1 PHD_FILE: MSMg01no159_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:15 2005CHROMAT_FILE: MSMg01no159_i04.g1 PHD_FILE: MSMg01no159_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAATACGCGGAA
TTCATTAAAAAGTTTTCGTATAACAATTCAGTGAATTATTACTGGCACTG
GAAAAAAAACCCTACTGGTATTTCACCCAAACGTCCATCCTCCCTTTCCT
TCAAACAGGGCTTCACCATGTAGCCATGGTTGGTCTGTACTCACTATGTA
GACCAGGGTGGGCTGGAACCCAGAGAAAGCTGTCTGCCAAATGTATCTGA
AATGCAGTATTCTGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAGCCAAAGTAAAAAATTCTGGGCTACTTATTTTATACAAAAATTATAG
GAAACAGTAAAAATGGTTATTTGCCCAAAAACCTGTTTGTTTACAATGTT
ACAAGCCGGAAAATGGGCATACAGGAATTCTCTATAATTTTGTAAATCTA
AAGATTTTAAAAACCTAAAACTATGTCAATTTTTTCCTATTTATCAAAAG
GCAATTTTTAAAAATCTCCAAAGTAGGATACAGGGTTTGCAATACATATA
CCCAATAAAGAGGTGATTTCCAAAGCCAGCAAGAAGGCTCAGCATGTAAG
CTGATGGCCTGGGCTCAGTCCCGGGAACCTATGTCATGGAAGGAGAGAAC
CAACTTCTGAAAACTGTCCTCTAAACTCCACCTGAGCTCCGTGGAATATG
TGCCCTGCTTCCACCACAAAAAAGCACGATAAAATT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTAAGATCTAAGAATAGGGGTGACATC
AGAAATAAAAGAGTGGCTCTTTTTCTGGAAGGTTCTAAATTAGCTAAATG
CTCCTAGTTCTGGCTTGCTTACAAGGAACACATGATAATGCTGGGGTGAA
GGGCATGGGAGAGTCCCCTGACATATGACAGGTAGCTAGGGATGCTGTTA
ACCTGCAATCCACAAAGCCTTATCTGTCAGTCATTTCTACCCCCACCCTC
TGCAAGCCAGGGTCTCACTATGTCACTCTAGCTGTCCTAGAACTCATTGT
GTAGACCAGGCTGGCCTTGATTTCACACCACACCCCCCTGCCTCTTCCTT
CCTCTTGCTGGGATTATAGACATCGATCACTATGCCCAGCTTGTTTTTCT
TAAAGGAAACAAAGGAACAAACAAAGCCCACTCTTAACTTTTAAGAATAA
GTGTTAAGTGCCTAAGAGCTTTGGGTCTAGATTCTAACCAGCTCTTTGTC
AAGGTCTTTACTTTGTCATGTGTAAAATGGGGATGATGTAACAGTCCTTA
CAAGTGAGGCTAAAAGAAAAGATGTCTAGCTTCAGTAAGGGATAAGTAGC
TTTATTTTCATAAGTACTGTTTTCTACTTTTTAAAGCCCCCAGTATGGCT
TAGAACAAGGAAAATGGTGGCATTGAACTCTTAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_i04.g1 MSMg01no159_i04.g1 CHROMAT_FILE:
MSMg01no159_i04.g1 PHD_FILE: MSMg01no159_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:15 2005
         (277 letters)



>mm_chr2_101925130_101925807
          Length = 678

 Score =  499 bits (258), Expect = e-146
 Identities = 273/278 (98%), Gaps = 1/278 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggtgacatcagaaataaaagagtggctctttttctggaaggttctaaattagctaaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggtgacatcagaaataaaagagtggctctttttctggaaggttctaaattagctaaatg 260

                                                                       
Query: 61  ctcc-tagttctggcttgcttacaaggaacacatgataatgctggggtgaagggcatggg 119
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctccctagttctggcttgcttacaaggaacacatgataatgctggggtgaagggcatggg 320

                                                                       
Query: 120 agagtcccctgacatatgacaggtagctagggatgctgttaacctgcaatccacaaagcc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagtcccctgacatatgacaggtagctagggatgctgttaacctgcaatccacaaagcc 380

                                                                       
Query: 180 ttatctgtcagtcatttctacccccaccctctgcaagccagggtctcactatgtcactct 239
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 ttatctgtcagtcatttctatgcccaccctctgcaagccagggtctcactatgtcgctct 440

                                                 
Query: 240 agctgtcctagaactcattgtgtagaccaggctggcct 277
           ||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 agctgtcctagaactcattatgtagaccaggctggcct 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 678
Length adjustment: 9
Effective length of query: 268
Effective length of database: 669
Effective search space:   179292
Effective search space used:   179292
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)