MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-159J16
Chromosome	2 (Build37)
Map Location	5,917,827 - 5,918,031
singlet/doublet	singlet
Overlap gene	Upf2
Upstream gene	Mcm10, Optn, Ccdc3, LOC100040292, Camk1d, LOC666599, Cdc123, Nudt5, Sec61a2, Dhtkd1
Downstream gene	LOC100040343, 5430407P10Rik, LOC634939, Echdc3, 1700014B07Rik, Usp6nl, LOC100040387, Cugbp2, LOC100040659
Link	Open Mouse BAC browser

Click to get alignment info.

name	Mcm10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70024 MGI:1917274
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Optn (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71648 MGI:1918898
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74186 MGI:1921436
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040292 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040292
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Camk1d (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:227541 MGI:2442190
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666599 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666599
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 7 Proteins pseudo : _no_value

name	Cdc123 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:98828 MGI:2138811
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nudt5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53893 MGI:1858232
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sec61a2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:57743 MGI:1931071
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dhtkd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:209692 MGI:2445096
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Upf2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:326622 MGI:2449307
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040343 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040343
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	5430407P10Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:227545 MGI:2442238
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC634939 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:634939
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 5 Proteins pseudo : _no_value

name	Echdc3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67856 MGI:1915106
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700014B07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72248 MGI:1919498
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	Usp6nl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:98910 MGI:2138893
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100040387 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040387
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Cugbp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14007 MGI:1338822
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040659 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040659
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 1 Protein

name	Mcm10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142369377 GeneID:70024 MGI:1917274
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : minichromosome maintenance deficient 10 (S. cerevisiae) transcript_id : NM_027290.2

name	Optn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133893033 GeneID:71648 MGI:1918898
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : optineurin transcript_id : NM_181848.4

name	Ccdc3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58037350 GeneID:74186 MGI:1921436
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 3 transcript_id : NM_028804.1

name	Camk1d (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:79750128 GeneID:227541 MGI:2442190
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calcium/calmodulin-dependent protein kinase ID transcript_id : NM_177343.3

name	Cdc123 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802547 GeneID:98828 MGI:2138811
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cell division cycle 123 homolog (S. cerevisiae) transcript_id : NM_133837.3

name	Nudt5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142387406 GeneID:53893 MGI:1858232
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nudix (nucleoside diphosphate linked moiety X)-type motif 5 transcript_id : NM_016918.3

name	Sec61a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130500 GeneID:57743 MGI:1931071
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Sec61, alpha subunit 2 (S. cerevisiae) transcript_id : NM_021305.3

name	Dhtkd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487484 GeneID:209692 MGI:2445096
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dehydrogenase E1 and transketolase domain containing 1 transcript_id : NM_001081131.1

name	Upf2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487282 GeneID:326622 MGI:2449307
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : UPF2 regulator of nonsense transcripts homolog (yeast) transcript_id : NM_001081132.1

name	LOC100040343 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149248861 GeneID:100040343
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : similar to Ubtf protein transcript_id : XM_001474524.1

name	5430407P10Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142361075 GeneID:227545 MGI:2442238
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 5430407P10 gene transcript_id : NM_144883.3

name	Echdc3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142363495 GeneID:67856 MGI:1915106
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : enoyl Coenzyme A hydratase domain containing 3 transcript_id : NM_024208.4

name	1700014B07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94366009 GeneID:72248 MGI:1919498
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700014B07 gene transcript_id : XM_888419.2

name	Usp6nl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:123173783 GeneID:98910 MGI:2138893
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : USP6 N-terminal like transcript_id : NM_001080548.1

name	Usp6nl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:123173768 GeneID:98910 MGI:2138893
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : USP6 N-terminal like transcript_id : NM_181399.3

name	LOC100040387 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149248866 GeneID:100040387
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100040387 transcript_id : XM_001474591.1

name	Cugbp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124286790 GeneID:14007 MGI:1338822
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CUG triplet repeat, RNA binding protein 2 transcript_id : NM_010160.2

name	LOC100040659 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149248876 GeneID:100040659
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 1 Protein product : similar to LOC639390 protein transcript_id : XM_001475153.1

name	Mcm10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29789189 CCDS:CCDS15662.1 GeneID:70024 MGI:1917274
definition	codon_start : 1 exception : mismatches in translation product : minichromosome maintenance complex component 10 protein_id : NP_081566.1

name	Optn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:32469491 CCDS:CCDS15663.1 GeneID:71648 MGI:1918898
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : TFIIIA-INTP product : optineurin protein_id : NP_862896.1

name	Ccdc3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037351 CCDS:CCDS15664.1 GeneID:74186 MGI:1921436
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : coiled-coil domain containing 3 protein_id : NP_083080.1

name	Camk1d (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:79750129 CCDS:CCDS15665.1 GeneID:227541 MGI:2442190
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0004685 - calcium- and calmodulin-dependent protein kinase activity [Evidence ISS]; GO:0005516 - calmodulin binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0042981 - regulation of apoptosis [Evidence IDA] codon_start : 1 product : calcium/calmodulin-dependent protein kinase 1D protein_id : NP_796317.2

name	Cdc123 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527052 CCDS:CCDS15666.1 GeneID:98828 MGI:2138811
definition	GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0000080 - G1 phase of mitotic cell cycle [Evidence ISS] codon_start : 1 note : novel protein similar to D123 gene product product : D123 gene product protein_id : NP_598598.1

name	Nudt5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:8393853 CCDS:CCDS15667.1 GeneID:53893 MGI:1858232
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0047631 - ADP-ribose diphosphatase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0017110 - nucleoside-diphosphatase activity [Evidence IDA] GO_process : GO:0006139 - nucleobase, nucleoside, nucleotide and nucleic acid metabolism [Evidence IDA] codon_start : 1 product : nudix (nucleoside diphosphate linked moiety X)-type motif 5 protein_id : NP_058614.1

name	Sec61a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946604 CCDS:CCDS15668.1 GeneID:57743 MGI:1931071
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0015450 - protein translocase activity [Evidence IEA] GO_process : GO:0009306 - protein secretion [Evidence IEA]; GO:0006605 - protein targeting [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : Sec61 alpha product : Sec61, alpha subunit 2 protein_id : NP_067280.1

name	Dhtkd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487485 GeneID:209692 MGI:2445096
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0016624 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0008152 - metabolism [Evidence IEA] codon_start : 1 product : dehydrogenase E1 and transketolase domain containing 1 protein_id : NP_001074600.1

name	Upf2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487283 GeneID:326622 MGI:2449307
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0048471 - perinuclear region [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0006986 - response to unfolded protein [Evidence ISS] codon_start : 1 product : UPF2 regulator of nonsense transcripts homolog protein_id : NP_001074601.1

name	LOC100040343 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149248862 GeneID:100040343
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474574.1

name	5430407P10Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625904 CCDS:CCDS15671.1 GeneID:227545 MGI:2442238
definition	codon_start : 1 product : hypothetical protein LOC227545 protein_id : NP_659132.2

name	Echdc3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31980955 CCDS:CCDS15672.1 GeneID:67856 MGI:1915106
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] codon_start : 1 product : enoyl Coenzyme A hydratase domain containing 3 protein_id : NP_077170.2

name	1700014B07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82796248 GeneID:72248 MGI:1919498
definition	codon_start : 1 product : hypothetical protein LOC72248 protein_id : XP_893512.1

name	Usp6nl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:123173784 GeneID:98910 MGI:2138893
definition	GO_function : GO:0005096 - GTPase activator activity [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2; novel TBC domain containing protein product : USP6 N-terminal like isoform b protein_id : NP_001074017.1

name	Usp6nl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:123173769 GeneID:98910 MGI:2138893
definition	GO_function : GO:0005096 - GTPase activator activity [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1; novel TBC domain containing protein product : USP6 N-terminal like isoform a protein_id : NP_852064.2

name	LOC100040387 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149248867 GeneID:100040387
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474641.1

name	Cugbp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124286791 GeneID:14007 MGI:1338822
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] [Evidence IDA]; GO:0005625 - soluble fraction [Evidence IDA] GO_function : GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006376 - mRNA splice site selection [Evidence IDA] codon_start : 1 note : elav-type RNA-binding protein 3; CUG triplet repeat,RNA-binding protein 2; CUG triplet repeat,RNA binding protein 2 product : CUG triplet repeat, RNA binding protein 2 protein_id : NP_034290.2

name	LOC100040659 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149248877 GeneID:100040659
definition	codon_start : 1 product : similar to LOC639390 protein protein_id : XP_001475203.1

name	LOC100040292 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040292
definition	number : 1 pseudo : _no_value

name	LOC666599 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149248871 GeneID:666599
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 7 Proteins product : similar to Mus musculus ribosomal protein L19 pseudo : _no_value transcript_id : XR_031939.1

name	LOC634939 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149248863 GeneID:634939
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 5 Proteins product : similar to TRAF-interacting protein pseudo : _no_value transcript_id : XR_031822.1

clone name	MSMg01-502C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-112C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412D22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-137A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533O04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-055G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-500G05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-265B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-475A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175F20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-087P24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-269N12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-214J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466G24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-462E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515A07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425L10
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-330O14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-068E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-159J16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-172P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476A02
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-068F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-334I23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088O14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-395D16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-145A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-073B21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412O14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-508G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335C09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-142K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-341H18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506I15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-067N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-103A04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530D12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-385E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-234M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-116H24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-347L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-297E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140K19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-379C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-073G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-111O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-099G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285D17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-339N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210N15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-027N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069C24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-157C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175D17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-274J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127L02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232J18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-076A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295E16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-073O23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-046K03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-025P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010P05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263J02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107F21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003J16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-012P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015D14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-033A23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-082K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184L10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-100P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-318M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228F18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-173O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316O09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047K12
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-159J16.T7 (MSMg01no159_j16.b1)	MSMg01-159J16.TJ (MSMg01no159_j16.g1)
ACC	AG359496	AG359497
length	736	734
length of high quality (start - end)	563 (44 - 606)	205 (74 - 278)
definition	CHROMAT_FILE: MSMg01no159_j16.b1 PHD_FILE: MSMg01no159_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:21 2005	CHROMAT_FILE: MSMg01no159_j16.g1 PHD_FILE: MSMg01no159_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:21 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA TTCCTGATTTGATTCAAATAACTTTCGGAAGAAAGTTTTAAGAGATAGTT TTGGTTGTTTTGCCAAAAAGATATAATATAGTTAGAATTAAAAACAGAAT GGGCCCACTCCTCATAGAATAGTAAGTAAAGACTCCATAGTAAGGAATAC TATAGCTTTCACAATTACACTAAAAAGAGAAAGAGGCTTGGACAGATGTG TGATCGAGGAAACACATTCATTCTAGATCAGCTCCAAGGATGAGGCCGCA GGTGTGCACTATGATAAAGAGAGGCAGTGTGAAACTGCTGCTTAGAACTT ATAATGACCTTATAGACTGAAACACGGCTTTGTACTGACTATCAACACCT TCTGCAACTCCCCTTTTGTGTAACACTTTATCTGTGGGGTAATTTTCTAA GGAACTTTTGTCTAAGAAGGTATAAAAAAGGCAGAGAAAAGAAATAAGAT GATGGCTTTGGGTGGGCTCTGCCCCATCCATCCAAATGTGTATATGTATA TGTCTGTTTATATGTCTGTATTTACATACGTGGGTAGGTATTAGTGTATG GATGTTCTGTTCNTATGGCTGGATTTACATACGTGGTTAGGTATTAGTGT ATGTATGTATTTATTCTAGTGTTTTCTTCCGATTCTTTCCTCTTTTATTT TTGATGCGATATTTCATTCCGTTTTTAAATTACCTG	TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXTAAATATTCTGATAGTGATGATTACTT ATTAACCAACAGTAAATAGTGAACAATGTAAAGACAATTCTCCTAAAACA ATCAAACCTCAGCGCTCCTTCTAAAACTCACAGACTTACAGGCACCACTT GCAGTTAATGATCAGTATTCAGTCACTAAGCTCAAGACATACAAAGACCA AGAACTCACATGTGCTTGCTCCCGAGGAGAAAGTCTTCCTGTATTTTAAT CCATTAGGGAGTTAGCCTTCTAAAAAATATGCCCCCTGAACTGGCTAGCC TTGTGTCATTTTGACCCACCTGCACTTATCACAAAGAAGGAGCTTCAGTT GGGGAAATGCCCCCATGAAATCCAACTCTAAGGCATTTTATCAATTAGTG ATCAAGGGGGAAGGCCCCTTGTGGGTGGGGCCATCTCTGGGCTGGTAGTC TTGGGTTCTATAAAAGAGCAGGCTGAGCAATCCAGGAAAAGCAAGCCAGT AAGGAACATCCCTCCATGGCTTCTGTATCAGCTCCTGCTCCCTGACCTGA GTTCCAGTCCTGACTTCCTTTGGTGATGACAGCAATGTGGAAATGTAAGC TGAATAAACCCTTTCCTTCCCAACTGTTTCTTGGCCAGGATGTTTGTGCA GGATTAGAAACCCTGACTAAAACACCCCCCTTCC
quality values	Open. Hide. 9 9 9 9 17 20 32 32 37 37 37 36 36 33 36 36 36 36 47 57 57 57 57 40 40 36 36 42 48 48 53 53 68 68 68 68 68 68 47 47 41 41 41 42 59 68 68 51 51 50 50 68 68 68 68 68 68 68 68 68 68 68 51 50 50 50 50 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 51 50 50 50 51 59 68 68 68 50 50 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 50 50 50 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 59 68 68 59 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 68 68 68 68 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 52 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 43 39 31 31 39 43 43 52 52 43 43 43 39 39 19 17 17 17 19 19 43 27 39 44 44 62 62 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 68 68 68 68 62 62 62 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 52 52 52 62 62 62 62 62 62 59 59 59 59 59 59 59 57 57 57 59 59 59 59 57 57 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 57 57 57 57 57 68 57 59 57 57 57 59 59 59 57 57 57 57 57 57 59 57 59 59 59 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 59 57 57 54 59 59 68 59 59 57 57 57 57 57 57 57 57 48 48 43 40 40 48 48 68 57 57 57 59 54 59 54 57 57 57 57 57 57 57 57 57 57 59 59 59 59 57 57 57 57 57 57 57 47 47 35 28 28 24 33 33 37 41 41 41 27 25 18 18 22 26 26 32 18 18 3 0 3 10 7 9 9 9 9 9 9 9 19 9 9 10 12 11 11 11 18 19 15 15 8 7 7 7 10 10 10 8 8 8 11 11 11 11 11 16 10 10 9 9 8 10 8 6 6 8 8 8 8 8 8 10 8 8 8 15 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 8 10 11 11 11 11 12 10 10 6 8 6 6 6 6 7 8 8 8 8 8 8 10 8 8 8 8 8 8 8 10 10 10 10 8 8 8 8 8 8 8 10 7 7	Open. Hide. 7 8 8 8 8 10 12 12 15 10 10 12 20 20 32 19 21 13 21 21 35 37 37 43 41 39 24 28 13 28 24 43 28 40 22 16 16 21 21 33 42 48 42 42 30 37 33 42 42 42 29 42 36 36 23 23 20 34 29 37 41 42 42 42 31 31 20 14 14 29 28 47 47 44 42 42 35 35 37 40 42 35 32 32 24 30 26 17 15 14 24 19 28 32 32 35 35 43 37 42 42 36 36 27 33 33 57 37 41 32 32 24 24 23 32 23 21 18 14 14 14 38 30 27 27 12 12 12 26 26 32 18 23 23 43 43 43 43 43 35 35 35 38 41 35 44 43 45 39 39 39 39 39 39 43 43 43 33 24 24 19 12 13 24 24 35 43 43 43 43 35 35 35 31 31 31 39 39 39 43 43 20 20 20 38 38 43 39 35 43 43 43 35 35 39 43 38 41 23 34 16 38 32 43 35 27 32 20 19 19 24 28 27 28 14 14 14 28 27 25 34 23 23 23 33 33 39 32 32 20 20 32 32 27 14 14 21 21 27 31 43 41 44 38 23 23 28 36 38 36 17 17 17 32 28 28 27 30 18 16 16 14 16 16 30 16 27 20 32 32 32 38 17 14 14 15 15 13 13 13 27 27 17 14 14 27 24 32 18 18 11 15 15 34 34 33 33 28 28 28 30 36 36 18 24 11 12 12 13 19 30 20 28 20 31 20 32 32 39 32 35 39 44 47 44 40 28 25 25 30 30 43 59 43 36 16 16 11 12 12 15 15 12 24 15 15 19 13 12 12 19 19 14 15 15 19 13 18 18 18 22 32 28 28 18 18 13 12 12 12 11 10 8 8 8 8 8 14 23 23 30 30 15 15 12 12 12 30 25 32 23 23 23 30 32 28 28 28 14 18 15 34 14 17 13 28 19 25 23 32 20 23 23 32 21 14 18 15 24 24 27 18 15 15 21 21 28 30 30 30 34 34 41 27 26 30 41 42 43 37 36 36 28 28 18 24 12 11 11 11 23 25 37 37 37 43 41 41 17 17 17 30 30 43 43 43 33 33 21 24 13 12 12 24 13 13 15 30 30 37 30 30 28 32 30 30 28 19 19 26 21 14 15 15 12 12 13 13 12 12 21 21 15 25 25 18 26 21 28 28 25 25 24 22 11 11 11 23 23 33 32 21 15 12 18 11 18 18 32 32 32 33 36 36 25 25 25 22 22 29 29 39 39 33 43 43 47 39 39 39 39 39 33 37 32 28 25 25 28 34 37 40 37 26 21 14 12 12 16 22 15 28 18 18 14 15 15 25 30 22 23 20 21 24 20 19 17 22 22 24 32 23 23 23 23 34 32 24 24 14 20 15 22 19 21 21 16 14 12 20 16 19 19 26 26 37 36 35 35 32 25 14 12 12 12 20 15 15 18 18 18 24 18 17 10 10 10 10 11 13 15 25 15 15 11 18 18 21 18 14 21 21 17 14 10 8 8 8 10 11 16 37 39 41 41 41 32 31 32 29 27 24 21 14 14 15 26 17 18 20 21 22 14 15 11 11 11 11 11 10 9 9 10 9 12 12 14 14 24 24 11 8 8 7 7 7 9 7 10 10 12 15 14 21 18 13 11 11 15 22 23 17 10 10 10 22 22 37 25 24 28 28 24 24

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no159_j16.g1 MSMg01no159_j16.g1 CHROMAT_FILE:
MSMg01no159_j16.g1 PHD_FILE: MSMg01no159_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:21 2005
         (205 letters)



>mm_chr2_5917627_5918231
          Length = 605

 Score =  381 bits (197), Expect = e-110
 Identities = 203/205 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaatattctgatagtgatgattacttattaaccaacagtaaatagtgaacaatgtaaag 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 taaatattctgatagtaatgattacttattaaccaacagtaaatagtgaacaatgtaaag 346

                                                                       
Query: 61  acaattctcctaaaacaatcaaacctcagcgctccttctaaaactcacagacttacaggc 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 345 acaattctcctaaaacaatcaaacctcagcgctccttctaagactcacagacttacaggc 286

                                                                       
Query: 121 accacttgcagttaatgatcagtattcagtcactaagctcaagacatacaaagaccaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 accacttgcagttaatgatcagtattcagtcactaagctcaagacatacaaagaccaaga 226

                                    
Query: 181 actcacatgtgcttgctcccgagga 205
           |||||||||||||||||||||||||
Sbjct: 225 actcacatgtgcttgctcccgagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 605
Length adjustment: 8
Effective length of query: 197
Effective length of database: 597
Effective search space:   117609
Effective search space used:   117609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information