TGTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAAAGAGAAGATAATATATGCCAAAATGGTAACTGTCTTTAAT
CTGGAAAACACAAATCAAGGTATACAAAAATCCTATGTCCTTTAATCAGA
ATGACTGTCAACAAGAAACCAAAGAGAACAAATACTGGAAGAGAGAGTAA
ATTAGTGCTGCCACTGTGAAAATCAGTGGTAAGTTTCCTCAGGTCATAAA
TATAGAACCATATATGATGCAGCTATACAATGTTTGAGTACTTACATAAG
GTGACTCAGTTCAACACACTGAGGTATTCCTGCACCCTCATGGTAAGTGC
AGTCCATTTTTTCCAATAGGTGGTTTGTGGAACTGGCCTAGGCGTTTGCC
ATTAGGTCAGAGAGTAACAAAAATGGTACCTATGCTTAATTTTGTACTAC
CCCATTGTAAAAAGGAATGAAATGTCATTCCCAGGAGAAGAAAATAGATC
ATAGAAGGACTGTAAATAATTATACTAAGTGGAAATTACTAGGTCCAGGA
AGAGAAATACCATGTTTCCCTTCATATGCACACAAGACTTAACATTTAAT
AATGAGGGCTTGAGAGAAAAGTGGAGCCTGTTCAGAAGGAACAGGGGATG
GGTCCAAGAAAGGATATAGAGTATGTGTGGATAAAGTCAAATTACATGAT
GACATATGACAAAGGAGTATACCAAACGAA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGAACATATAAAACAAACAAATA
ATCACCTACTAAGATCAGACAGTTTTCCTCATAGAGATGTAAGGGTGATT
CAACTAGGTAAATTGATAAATGTATCTACCACACCAACAAACTGAAAGAC
AAAACCACATGATCATCTCATTAGTTGTAAAATAGCTTTTCACCAAATCT
ATCATTCTTTCATGATAAAGTTCATGGAGAAATTAAGAATACAAGAATAT
ATTTCAACACAATAAAGAGGTTTATAACAATCCCATAGCCAACAAAGAAT
TTCCTCTAAAATCAGGAACAATGTGAGGCTGTCCATGCTCTTCCTAGCTT
TGTAATATAGTACCCAATGTCTCAACTACACAATTAAGGTAAGTTCAAAG
GAATACAAATTGAAAAGAAGGGAATCACAGTAAATTCATTTGTAGATGGT
ATCATAGGGTGTGTTAGTTATCCTTTTCATTGGGAAACTCCTATAAGTTG
TTCTCCTGTATAGAAAGGACAAATGGACCAATGAAGGAATCAGTGAAAGC
ACACCTATCAGAGTATCCTTAAATAATATAAAATATATTGGATATATATC
ACCAAGCAAGTAAAAAAATGTATGATAAAAATATTAACACATTGATGAAA
GAAACTACAGAAGATACCAGGNAAATGGAGCGA

Query= MSMg01no159_p03.b1 MSMg01no159_p03.b1 CHROMAT_FILE:
MSMg01no159_p03.b1 PHD_FILE: MSMg01no159_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:46 2005
         (677 letters)



>mm_chr2_42606066_42607144
          Length = 1079

 Score =  659 bits (341), Expect = 0.0
 Identities = 369/379 (97%), Gaps = 3/379 (0%)
 Strand = Plus / Plus

                                                                       
Query: 302 gcagtccattttttccaataggtggtttgtggaactggcctaggcgtttgccattaggtc 361
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| 
Sbjct: 501 gcagtccattttttccaataggtggtttgtggaactggcctaggcatttgccattaggtt 560

                                                                       
Query: 362 agagagtaacaaaaatggtacctatgcttaattttgtactaccccattgtaaaaaggaat 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agagagtaacaaaaatggtacctatgcttaattttgtactaccccattgtaaaaaggaat 620

                                                                       
Query: 422 gaaatgtcattcccaggagaagaaaatagatcatagaaggac-tgtaaataattatacta 480
           |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 621 gaaatgtcattcccaggagaagaaaatatatcatagaaggacctgtaaataattatacta 680

                                                                       
Query: 481 agtggaaattactaggtccaggaagagaaataccatgtttcccttcatatgcacacaaga 540
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtggaaattaccaggtccaggaagagaaataccatgtttcccttcatatgcacacaaga 740

                                                                       
Query: 541 cttaacatttaataatgagggcttgagagaaaag--tggagcctgttcagaaggaacagg 598
           |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||
Sbjct: 741 cttaacatttaataatgagggcttgagagaaaaaaatggagcctgttcagaaggaacagg 800

                                                                       
Query: 599 ggatgggtccaagaaaggatatagagtatgtgtggataaagtcaaattacatgatgacat 658
           ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggatgggtccaggaaaggataaagagtatgtgtggataaagtcaaattacatgatgacat 860

                              
Query: 659 atgacaaaggagtatacca 677
           |||||||||||||||||||
Sbjct: 861 atgacaaaggagtatacca 879



 Score =  315 bits (163), Expect = 6e-90
 Identities = 163/163 (100%)
 Strand = Plus / Plus

                                                                       
Query: 145 agagagtaaattagtgctgccactgtgaaaatcagtggtaagtttcctcaggtcataaat 204
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agagagtaaattagtgctgccactgtgaaaatcagtggtaagtttcctcaggtcataaat 60

                                                                       
Query: 205 atagaaccatatatgatgcagctatacaatgtttgagtacttacataaggtgactcagtt 264
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atagaaccatatatgatgcagctatacaatgtttgagtacttacataaggtgactcagtt 120

                                                      
Query: 265 caacacactgaggtattcctgcaccctcatggtaagtgcagtc 307
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caacacactgaggtattcctgcaccctcatggtaagtgcagtc 163


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 677
Length of database: 1079
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1069
Effective search space:   713023
Effective search space used:   713023
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)