BAC Information

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BAC

Clone NameMSMg01-160B22
Chromosome2 (Build37)
Map Location 73,645,943 - 73,646,173
singlet/doubletsinglet
Overlap genenone
Upstream geneSp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1
Downstream geneAtf2, Atp5g3, LOC667729, LOC100040172, Lnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160B22.T7 (MSMg01no160_b22.b1)MSMg01-160B22.TJ (MSMg01no160_b22.g1)
ACCAG359875AG359876
length737739
length of high quality
(start - end)
340 (73 - 412)231 (129 - 359)
definitionCHROMAT_FILE: MSMg01no160_b22.b1 PHD_FILE: MSMg01no160_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:59 2005CHROMAT_FILE: MSMg01no160_b22.g1 PHD_FILE: MSMg01no160_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTGTACCCTGAGCCCCATTTTTTAATGGGGTTATTTGAT
TTTCTGAAGTCCACCTTCTTGAGCCCTTTATATATGTTGGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTC
ATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGT
TCTGTTCAGGAATTGTTCCCCTGTGCCCATCTCTTCAAGGCTTTTCCCCA
CTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTG
ATCCACTTAGATTTGACCCTAGTACAAGGAGATAAGTATGGATCGATTCG
CATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAA
TGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAG
TGACTATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTG
GTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTG
CTCTGTAGTAAAGCTTTAGGTCTGGCATGGTGATTCCGCCAGAAGTTCTT
TTATCCTTGAGAAGACTTTTTGCTATCCTAGGTTTTN
ACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAAGGGACGCAGGTTGGACTG
TCACAGGGGCTCCGCTCATATTTGGCGGGCACTGTGGAGCTAGGGAATTG
AACAACATAAGAGGGCAGAATGGGAACCTCGTTTGGTAGAGAAGTAAACC
AGGAGTCAATAAAGATGGCTGTAGTCTGGGTGTTATGATGCAGGGACCCA
GCTCTGTGCCACCCATGTTCCAGTTATGCCTCAACCTCACAAACTGCTGA
GTGTGCTCAGAAGTCACGGGGCATTTTTGAAGGTATGGAGACTCCCTTTG
CGGCGGCCTGTGGGCTCCCTCGAAGACCAAGGCTCAGGAGTAGCAGATGG
NAGNAGAGTCAAGTGGTGGAAAGAGTGGGAAGNTATTTAGGGGGGGGCGG
GGGAGCGTTTTTTTGGGAGCCGAAGTGATGACTCAGCAGCTAAGAGCCCT
TGCTCGCGCAGAGGACCCAGGTTCAATTCCCAGCACCCACATGACAGCTT
ACTGTTACACTGTGTCTGTTGGCATGAGGAAGGGGAGAGAAAACAGCAGT
GGGCTTGTGAAACAGCAAAATCTTTTATTATCGCCACCGCATAAACAAAG
TTGCTGATCATCAGGGCTACCAGAGGAGGACTAGGGAGCCTCGTTTCTCC
TGGCAGCCCCAAGCAGGGTCTGAAACAGGGTCTATAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_b22.g1 MSMg01no160_b22.g1 CHROMAT_FILE:
MSMg01no160_b22.g1 PHD_FILE: MSMg01no160_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:59 2005
         (231 letters)



>mm_chr2_73645743_73646373
          Length = 631

 Score =  402 bits (208), Expect = e-117
 Identities = 225/236 (95%), Gaps = 10/236 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcactgtggagctagggaattgaacaacataagagggcagaatgggaacctcgtttggta 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gcactggggagctagggaattgaacaacataagagggcagaatgggaacctcgtttggta 372

                                                                       
Query: 61  gagaagtaaaccaggagtcaataaagatggctgtagtctgggtgttatgatgcagggacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gagaagtaaaccaggagtcaataaagatggctgtagtctgggtgttatgatgcagggacc 312

                                                                       
Query: 121 cagctctgtgccacccatgttccagttatgcctcaacctcacaaactgctgagtgtgctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cagctctgtgccacccatgttccagttatgcctcaacctcacaaactgctgagtgtgctc 252

                                                                   
Query: 181 agaagtcacggggc-----atttttgaaggtatggagactccctttgcggcggcct 231
           ||||||||||||||     |     |||||||||||||||||||||||||||||||
Sbjct: 251 agaagtcacggggcaaagga-----gaaggtatggagactccctttgcggcggcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)