BAC Information

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BAC

Clone NameMSMg01-160P15
Chromosome2 (Build37)
Map Location 57,713,024 - 57,713,312
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
Downstream geneGalnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926, Acvr1c, LOC667062, Acvr1, LOC674940, Upp2, BC062650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160P15.T7 (MSMg01no160_p15.b1)MSMg01-160P15.TJ (MSMg01no160_p15.g1)
ACCAG360503AG360504
length732722
length of high quality
(start - end)
324 (45 - 368)296 (71 - 366)
definitionCHROMAT_FILE: MSMg01no160_p15.b1 PHD_FILE: MSMg01no160_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:05 2005CHROMAT_FILE: MSMg01no160_p15.g1 PHD_FILE: MSMg01no160_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATCAGACCTTTAAAGAAGACCTATTACCAATACTCTTCAAACTAT
TCCACAAATAGAAACAGAAAGGCACTAACCAATTCGTTCTACAAAGCTAC
AATTATTCTGATACCTAAACCAGACAAAGACCAAACAAAGAATGAAGACT
TCAGACCAATCTCCCTTATGAACACTAATGCAAAAGTACTCAATAAAATC
CTTTCAAACTGAATCCAAGAAACACATGAAAACAATCATCCATCACGATC
AAGTAGGCTTCATCCCAGGGATTCAGAGATGATTCAATAAACAGAAATCC
TTCAATGTAATCCACTATTTTTACAAACTCCCCCACCAAAAAACATGATC
ATTCATTAGATGCTGAAAAAGCATCCGACAAAACTCAACATCCATTCATG
TTAAAAGTATTAGAAAGATCAGGAATTCAAGGTTCAAAACTAAGCATAGT
AAAAAGCAATGTACAGCAAACCAGTAGCCAACATCAAACTAAATGGAGAA
AATCTTGAAGCAATCCCACTAAAATCAGGCAGTAGACATGGCTGCTCACA
CTCTCCCTATATATTCAACATCGTATTGAACTTCTAGCTAGAGCAATTAG
ACAATAAAAGAGGTCACAGGGATACAAATTGGAAAGGATGTAAAAAATAT
CACTATTTGCAGATGATATGATCATATACTTA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACAGGAGAGTGGAAGGGACAATGTCTTGCG
GTCCTAACAGATAATGAGGCAAGAAAGAGACTTTATTTTTTTCTTGAAGA
TCTTTCTCTAGCAATCATGTTGGGTGTGCCATTTGAGACACGTAAAATGG
AAGACAGAGCGGTGGGGGTAGGGGCTTAGAGGAGCCTAATTAGATTAATG
AGAGAAGAACATGGCTCTTTGAGATTTCTTTTTTCTAATCTTATCACGAA
CTTCCAACCTTGTTCACTTGCTCCCTCTTCTGGCCCTTCTCAGTCACCAA
TACCTTTTTTACACCCCCCCCCCCACCCTTGTGATTACCACTCTCTGTTT
ATCCTCTTCCCCCCTGTGTTATTAAAACTTACGGGTATTAATAACAGATT
TCACTGATATCTGCTTTTCCAAGTTCATGCATTCAATATTTATCCCACTT
GAAAGGACATTTTACCGCTTTCCTATGAGAAAGGAAAGATAAGAGCAGCA
TCTATCAAGAAGTCCTTCCTAGTCTGCGGAGGATCAATGCGTAGCATCCC
CTTTTATTTTGAGCAGCACGTTTACTTCTCATTGGTTCTTTTCTGACTAA
GAAATTGCTACGCCCTTGTCACCCCCTTTTGGTAAAAAAATCTCCCCCAA
CCTGGTGATGCTCCCCTTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_p15.g1 MSMg01no160_p15.g1 CHROMAT_FILE:
MSMg01no160_p15.g1 PHD_FILE: MSMg01no160_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:05 2005
         (296 letters)



>mm_chr2_57712823_57713518
          Length = 696

 Score =  499 bits (258), Expect = e-146
 Identities = 282/290 (97%), Gaps = 1/290 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaggagagtggaagggacaatgtcttgcggtcctaacagataatgaggcaagaaagaga 60
           |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 490 acaggagagtggaagggacaatatcttgcagtcctaacagataatgaggcaagaaagaga 431

                                                                       
Query: 61  ctttatttttttcttgaagatctttctctagcaatcatgttgggtgtgccatttgagaca 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ctttattttttccttgaagatctttctctagcaatcatgttgggtgtgccatttgagaca 371

                                                                       
Query: 121 cgtaaaatggaagacagagcggtgggggtaggggcttagaggagcctaattagattaatg 180
           ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 370 cgtaaaatggaagacagagcggtgggggtgggggcttagaggagcttaattagattaatg 311

                                                                       
Query: 181 agagaagaacatggctctttgagatttcttttttctaatcttatcacgaacttccaacct 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 310 agagaagaacatggctctttgagatttcttttttctaatcttatcatgaacttccaacct 251

                                                             
Query: 241 tgttcacttgctccctcttctggcccttctcagtcaccaatacctttttt 290
           |||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 250 tgttcacttgctccctcttctgacccttctcagtcaccaatac-tttttt 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)