BAC Information

Click to search

BAC

Clone NameMSMg01-161C10
Chromosome2 (Build37)
Map Location 122,546,067 - 122,546,259
singlet/doubletsinglet
Overlap genenone
Upstream geneFrmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4
Downstream genePldn, Sqrdl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161C10.T7 (MSMg01no161_c10.b1)MSMg01-161C10.TJ (MSMg01no161_c10.g1)
ACCAG360631AG360632
length1,2431,265
length of high quality
(start - end)
424 (28 - 451)193 (504 - 696)
definitionCHROMAT_FILE: MSMg01no161_c10.b1 PHD_FILE: MSMg01no161_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:26 2005CHROMAT_FILE: MSMg01no161_c10.g1 PHD_FILE: MSMg01no161_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTGCAGTGGCGCTAAGACTCCTAAGGGAGAGGATCCGCGGAATTCCAA
TTTTTCACATCTATGCTCCTAGTGCAAGGGTACCCACACTGATAAAAGAA
ACTTTACTAAAGTTGAAAATACACATTGAACCCCACACAATAATAGTGGG
AATTTTCAACACACCCACTCTCCTCAATGAACAGATCATGGAAACACAAA
CTAAACAGAGGAAACTCAAATGATTGAGAAGCACCTAAAGAAATGTTCAA
TATCCTTAGTCATCAGGGAAATGCAAATCAAAATAACCCTGAGATTCCAC
CTCACACCAATCAGAATGGCTAAGATCACAAACTCAGGTGCCAGCAGATG
TTGGCAAGGATATAGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATT
GTAAGCTGATACCACCCCTCTGGAAATCAGTCTGGCAGTTCCTCACTAAA
TTTTTCCTCCCCCCCCTGGAGGACCCAGCTATACCACAAATGGGAATATA
CCTAGAAGATGCTCCAGCATGTAATAAGGATACATGTTCCACTATGTTCA
TAGCAGCCTTATTTATAATATCTAGAAGCTGGAAACAACCCAGGTGTCCC
TCAACAGAGGAATGGATACAGAAAATGTGGTGTTCTTTGTATCTTGATGG
GTCTTGTTAAGACCCTGAATACAGTAATTATGGGACCTTTGTTTATGCTT
TGTTCCTTAACTACTCAGTTTATGCTTTGTTTGTTTCTTGACTACTTTGT
TTACCCCTTAGGACTGGCCATATTGTTTGTATGTATCTAGAATGATATAA
AAGCAGACTGGAAAAGGATAAACCCTCTTTCTTACACGCATTCTCGCGAC
TGGCCAGGAAAGACGCAACAAAACGGAATCTTCTGCGGCAAAAGCTTTAT
TGCTTACATCTTCAGGAGCCAGAGAGCAAGAGCTCTATTGCTTACTCCTT
TAGGAGCCCGAGCGCAGAACCAAAAAAGCAGAGTGCCAGCGCTTTATTGC
TTAAAATCCTTATGAACAAAAACCTAGACCCCTAATAATAAAAAAAAATG
CGGAAACCCCTCCCCTTTTAAAAAAATTATTCCCCCCCTAAAAAAGGGCC
CTCCCTGATTGTTTGGTCCCTCCCCCCCAAATTTTTTTTCTGTGTAAAAA
AAAAAAATTTATCGGAAAAATACCCTGTGTTCCTCGCCGAATATATTTTT
TTCACCTTCAAACAAAAAGTGTGTGGCTCTTTCTTTATAAAAG
NNNTTTACAAGTGAGCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCAGGCAAAGAGAATGTCTCCTGCCAAAC
ACTGGTTTTGTTTCTGATTCTCTGACTGAAGTCTAACTTGGCTGGGGTTG
GGCTCTGTGAGGCCTGCACAGAGCAATGAAGGAAGAGCCTGGAGCAGTAA
GGGAGCCAGGGAGTTAATTGACAGTTGCCCAAGACAAGTACACTCCGGAG
GAGAAAAGAAAAGACTGACAGTTCAGTGTGTAAAGGTGAGGAAACTGGTT
GTACCACAAACTCAACTGTACCTCAGCAGCTGCAGTTACTGGCAAGGGGA
AGGTGGCGGGGGAGGAGACAGCAAACTTCAGTATCTGCAGACTGCATGAA
ATAATATTATTCTTCAGAAAGCCCACGTTCACTTTGGTTTCTTTATTTCT
ATTTTTTTTTCCCCCCCCCCAAATAAATGTGTATCTTCACAAAAAGAGAG
GCCACGTTCACCTGCAAAGACAAACATAGCAGGTAAACAGCAGTGCATAG
AAGGAGGGGACAAACACCCTCCTCTGTCTAGAATGTTTCCCTAACATTAT
GGAAAATTCTGGCGACTTTTCCAGAAACACACACGGATTCTATATATTGT
AATTACTCGAAGCAAGAATAAAATTTAGAGTTTGAATAAATAGGATGTCT
GCATGAAGATAGATTTAAGTTAGACATAAAATGATAGCAGTATGTATGAG
CATGGAAAGGAAAAAATGAGAGTTAGAAAGATGGTTCACTGGTTAAGAGC
GCTTTGCAGATCTTGCAGAGGACCCAGGTTCAATTCCCAGCACCTACATT
GTGGCTTAAGAGTGACTGTACCTCCAGTTCTAGGGAATCCAACTTCCTCT
TCTGGCCTCATGGGGCATTACATACTTGCCGGGAAAAAATCCCGAATAAC
CAAATCTTTTTGAAAAAACCAAGGTTGAAATTGTACGCCTTTTGGGACAA
GGACTAAGGTTTGATTTGAAACCTTTATTCTTACGCATATTTTTTAGTTT
CTTAAAAAAAAAGGAATTTTTTTTTTGTAAAAAAAGAAACAAAAAATGAA
TCTTTGACCTTGTTTTAGCCTCCCTGATAAAATATTTTAAAGGTTGTTTT
TTTGTATTTACCCAAATTTCGTATAGTGTAAAAATTTTTGAATCCTTGGC
CATACCCCCTAATCCTTGTGTGGAAAATGGTAAAANCCGGCATTTTTTTT
CTTCTCTACTATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_c10.g1 MSMg01no161_c10.g1 CHROMAT_FILE:
MSMg01no161_c10.g1 PHD_FILE: MSMg01no161_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:26 2005
         (193 letters)



>mm_chr2_122545867_122546459
          Length = 593

 Score =  358 bits (185), Expect = e-103
 Identities = 191/193 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acgttcacctgcaaagacaaacatagcaggtaaacagcagtgcatagaaggaggggacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 acgttcacctgcaaagacaaacatagcaggtaaacagcagtgcatagaaggaggggacaa 334

                                                                       
Query: 61  acaccctcctctgtctagaatgtttccctaacattatggaaaattctggcgacttttcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 acaccctcctctgtctagaatgtttccctaacattatggaaaattctggcgacttttcca 274

                                                                       
Query: 121 gaaacacacacggattctatatattgtaattactcgaagcaagaataaaatttagagttt 180
           ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 273 gaaacacacacggattctatatattgtaattactcgaagcaggaataaaattcagagttt 214

                        
Query: 181 gaataaataggat 193
           |||||||||||||
Sbjct: 213 gaataaataggat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)